Gene Shewana3_2880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2880 
Symbol 
ID4478755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp3444500 
End bp3445444 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content44% 
IMG OID639727486 
Productporin 
Protein accessionYP_870513 
Protein GI117921321 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.45677e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.46129e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATGAACG TTTTTTGTAA AACTCTACTT GCTTCTGCGC TAGCTTCTGC AACTCTGGCT 
TCTGCTTATG CCGCTGAGCC ACTGACTGTT TATGGTAAGT TGAATGTTAC CGCTCAATCA
AATGATGAGA AAGGTGATTC TACAACAACT ATTCAAAGTA ATGCTTCTCG TTTTGGTGTG
AAGGGTGATT TCGAACTGTC TAGCTCGCTG GAAGCGTTCT ACACAGTAGA GTACGAAGTT
GATACTGGCG CTGCAACAAG CGACAACTTC AAAGCCCGTA ACCAATTCGT TGGTTTAAAA
GGTGCATTTG GTTCTTTCTC TGTTGGTCGT AACGACACTC TGTTAAAGAT CTCTCAAGGT
AACGTTGACC AGTTCAACGA TTTATCTGGT GACTTAAAGA GCCTGTTCAA AGGTGAAAAC
CGTTTAGGCC AAACGGCAAC TTACCTGTCA CCTTCAATCG GTGGTTTCGT ATTCGGTGCA
ACTTATGCTG CTGAAGGCGA TGCTGACCAA CAAGCTCAAG ACGGTTTCAG CTTAGCCGCT
ATGTACGGTG ACGCTAAACT GAAAAAATCA CCTTTCTACG CCGCTATCGC TTACGATTCT
GACGTAAAAG GTTACGAAAT CCTGCGTGCA TCGGTACAAG GTAAAATCGC TGATTTAACC
TTAGGTGGTA TGTACCAACA ACAGGAACAA ACCTACAAAA ACTCTTTACC TGTTAACACT
GACAGCGTGA ACGGTTACCT GTTAAGCGCC GCTTACGATA TCAACGCAGT GACCTTAAAA
GCTCAATACC AAGACATGGA AGACTTAGGC GATTCATGGT CAGTGGGTGC GGACTACAGC
TTAGGTAAGC CAACGAAAGT GTTTGCTTTC TATACTAACC GCTCTATGGA AGCGTCTAAC
GACGATGACA AATACATCGG TGTTGGTTTA GAACACAAGT TCTAA
 
Protein sequence
MMNVFCKTLL ASALASATLA SAYAAEPLTV YGKLNVTAQS NDEKGDSTTT IQSNASRFGV 
KGDFELSSSL EAFYTVEYEV DTGAATSDNF KARNQFVGLK GAFGSFSVGR NDTLLKISQG
NVDQFNDLSG DLKSLFKGEN RLGQTATYLS PSIGGFVFGA TYAAEGDADQ QAQDGFSLAA
MYGDAKLKKS PFYAAIAYDS DVKGYEILRA SVQGKIADLT LGGMYQQQEQ TYKNSLPVNT
DSVNGYLLSA AYDINAVTLK AQYQDMEDLG DSWSVGADYS LGKPTKVFAF YTNRSMEASN
DDDKYIGVGL EHKF