| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2612 |
|---|
| Symbol | |
|---|
| ID | 4478480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3118622 |
|---|
| End bp | 3119824 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639727215 |
|---|
| Product | exodeoxyribonuclease I subunit D |
|---|
| Protein accession | YP_870245 |
|---|
| Protein GI | 117921053 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.84718 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000344007 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTTA TCCATACCTC GGACTGGCAC ATTGGCCGCC AGTTACACAA TCAATCACTC
TTAGAAGACC AAGCCTATGT GCTTGATCAG ATTGTGACAT TGGCAGAGCA GCACTCTGTC
GATGCGGTGA TTATTGCCGG GGATATTTAC GATAGGTCGA TTCCACCTGC CAGCGCCGTG
GCTTTGCTCG ATGAGGTGCT TAATCGCCTT ATCACAGAGT TAGGGTTACA AGTACTGCTG
ATTGCCGGTA ACCACGACGG GCACGAACGC TTAGGCTTTG CGGCCAAACA AATGGCGGCA
AGTGGTTTGC ACATTATTGG GCCACTGCAG GCTGATTTAA CGCCGATCCG CTTAACCAGC
CCAAGTGGCG ATGCTTACTT TTATCTGCTG CCTTACGCCG AACCTGCAAC CGTGCGCCAA
GTATTTGAGG CGGAAGCTAA TGGGCTTAGC GTATCCAGTC ATGAAGAGGC GATGACGCTA
CTGTTAGAAC TAGTCCGCAG CCACGACAGC CAAGGGTTAC CTAAAGTCGT GGTTAGTCAT
TGCTTTTTAG ATGGCGGCAG TGAGTCCGAG TCCGAGCGGC CATTGAATAT TGGTGGTGCC
GATAAAATCT CCCCACGGCT TTTTAGTGAG TTTGACTATG TGGCCCTCGG CCACTTACAC
GGACCGCAAT ATAAAGGTTG CGAGCATGTA CGTTATTCCG GCTCGATTTT GAAATATTCC
TTTAGCGAAC AGCATCAACA CAAGTCAGTC ACTTTAGTGG ACGTTGCAGC GCAAACTCCG
GCGCAAATCC AACTCTTGCC CTTAACGGCG CTGCGCGATG TGCGGATTAT CGAAGGGGAA
TTGGCGCATT TATTAGATCT TGGGAAAACC GATGCTAAGC GTGAGGATTA TCTGATGGTC
AGACTCCTCG ATAAACACGC CATTTTAGAT GCCATGGGCA AACTGCGCAG TGTCTATCCC
AATGTGCTGC ATCTAGAACG CACAGGATTA ATGGCGGGCG AGCAGGCCGT CACACTCAAT
CGTGACCATA TCAAAAAAGG CGAAATGGCC ATGTTCCGTG ATTTTTTCAG CCAAGTCTCT
GGCGAGGCGC TGAGTGATGC GCAGCAAGCG GTTATGGATG AGATTTTAAC TAAGCTTCAC
AGGGATGAAG GGGATAGCGT TGGATCTACT CGCGTTAAAG CCAAAGGGGA GCAATCCGCA
TGA
|
|---|
| Protein sequence | MRFIHTSDWH IGRQLHNQSL LEDQAYVLDQ IVTLAEQHSV DAVIIAGDIY DRSIPPASAV
ALLDEVLNRL ITELGLQVLL IAGNHDGHER LGFAAKQMAA SGLHIIGPLQ ADLTPIRLTS
PSGDAYFYLL PYAEPATVRQ VFEAEANGLS VSSHEEAMTL LLELVRSHDS QGLPKVVVSH
CFLDGGSESE SERPLNIGGA DKISPRLFSE FDYVALGHLH GPQYKGCEHV RYSGSILKYS
FSEQHQHKSV TLVDVAAQTP AQIQLLPLTA LRDVRIIEGE LAHLLDLGKT DAKREDYLMV
RLLDKHAILD AMGKLRSVYP NVLHLERTGL MAGEQAVTLN RDHIKKGEMA MFRDFFSQVS
GEALSDAQQA VMDEILTKLH RDEGDSVGST RVKAKGEQSA
|
|---|
| |