| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2372 |
|---|
| Symbol | |
|---|
| ID | 4479607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2850685 |
|---|
| End bp | 2852505 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639726969 |
|---|
| Product | AsmA protein |
|---|
| Protein accession | YP_870007 |
|---|
| Protein GI | 117920815 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00905663 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0519979 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA TTAAGTGGCT TTTAGCTCTT CTGGTGACCT TAGTGGTTGC AGTCACCTTA
TATCTCACCG TATTTTTCGA CCCTAATGAT TTTAAACCAG AAATTGTCAA TTCCGTTAAA
AAGCAGACAG GGCGTGAGCT TGTCATCGGT GATGATTTGT CGTGGACATT TTTCCCGACG
GTTGGGATCA ATCTAGGGGG GATTTCACTC TCTAATCCCG AGGGATTTAC ACCTAAAGCT
ATGCTTGAAG TGAATAAAGC TGTGGCAGAA GTCGAGCTTA TGCCACTGTT TAGCAAGCAA
ATTGAAATCG CGCAGCTAAG CCTTGATGGT GCAAAAATCA ATCTGGTCAC CCGTAAAAAT
GGCAGTTCGA GCCTCGATGG CTTAACGGGC AAGGGCGCAG AAAAAACCGC AACGCCTGCC
GAGCCAAGCG CCAAAGCACA ATTAACCAGC ATTGATGTGG GCGGCGTTTC GATTACCAAT
ACCGAAATCA ATTTGATTGA TGAAGCCAAG GGACAAACCC AAACCTTAAC CTTGAAGCAA
TTTACACTGG GGGCATTTTC ACTCGATAAA TTTGCACCTA TGGCCTACGA ATTCGCCGCG
ACCCTACCTG ATATGACTGT AAGCAGTAAA GGCGAAGGAC AAATCAAGTT AAGCCATGAT
TTTAATCAGC TGGTGATTGA GAAGTTGGAT ATTGAGACTC AAGTTGAAGG CGAGGGGATC
CCCAATAAAA AACTGACCGC AGAGGTTAGT CTAAATAGTC AAATCGCATT AGATAAAAAG
CAGTTGTCGG CGGACATCAG TAAATTAACG GCGATGGATA TCAATGCAGC GGGAAAGTTG
GCGGTGAATT ACGGCGGTAA AGTGCCGCAA ATTAACGCGG ATTTGCAAGT GGGTGACATT
GACCTCGATG CCTTATTGCC AAAATCGGAT ACGGCGGAAA AACAAGCCGC TGCCACGCCT
TCACAGACTC AGGCGGTTGA GCCAGATCTT ACCGCGCTCA ATGGCTTAGA TGCCAAACTG
ACATTGGCTG TGAAATCCAT CAAGGTGGCG AACCTGTCAA CGCAGAACTG GTTGATGGAT
TTAGGCATTA AGAATGGTGT GGTTGATCTT AAGCAACTGA CGGCGGATCT TTACCAAGGT
AAATTGATGC TCAATGCGCA AGTTGATGCC CGCTCAAAAG TTGCCAGTTA CCAATTTGAT
AAGCAAATCT CGGGTGTACA AATTCGTCCA TTACTTAAGG ATGCCGCTGA GCTGGAAATC
CTAGCAGGTA CGGCCAATTT CAACGTTAAG GGTAAAGGTA AGAGTTTAAT TCCAGAGCAG
TTGAAGAAAA ACCTACTTGC TAATGGCCGT TTTGATATTA CCGACGGTGC CCTTTACGGG
GTGAATATTC CACAAATGAT CCGTAGTGCT CAGGCCAAGT TAAAAGGTGA CATGTCTGCC
GACACCAAAG AAGAGCGTAA AACCGACTTC TCGAGCCTGA CGGGTAACTT CAGCCTAGAA
AACGGTGTAG CGACAAATCC TGATCTTGCC ATGTCATCAC CGCTATTACG GGTGGCGGGT
AAAGGCAGTG CAAACCTGTT GACCGAAGGC TTGGATTACC GATTGACCAC GACCTTAGTC
AATTCCCTCA AAGGTCAGGG CGGTAGCGAG AAAGATGCAT TGGCTGGCAT TGATATTCCA
CTGGCGATCA CCGGCACCTT CCAAAAACCT GAGTATGCCT TAGATACCCA AGCGCTGCTG
AACAATCAGT TGAAGGAAGA AACGGATAAA GCCAAGGATA AATTAAAGGA CTCCCTACTG
AAAAAACTCG GTGGTTTTTA G
|
|---|
| Protein sequence | MKFIKWLLAL LVTLVVAVTL YLTVFFDPND FKPEIVNSVK KQTGRELVIG DDLSWTFFPT
VGINLGGISL SNPEGFTPKA MLEVNKAVAE VELMPLFSKQ IEIAQLSLDG AKINLVTRKN
GSSSLDGLTG KGAEKTATPA EPSAKAQLTS IDVGGVSITN TEINLIDEAK GQTQTLTLKQ
FTLGAFSLDK FAPMAYEFAA TLPDMTVSSK GEGQIKLSHD FNQLVIEKLD IETQVEGEGI
PNKKLTAEVS LNSQIALDKK QLSADISKLT AMDINAAGKL AVNYGGKVPQ INADLQVGDI
DLDALLPKSD TAEKQAAATP SQTQAVEPDL TALNGLDAKL TLAVKSIKVA NLSTQNWLMD
LGIKNGVVDL KQLTADLYQG KLMLNAQVDA RSKVASYQFD KQISGVQIRP LLKDAAELEI
LAGTANFNVK GKGKSLIPEQ LKKNLLANGR FDITDGALYG VNIPQMIRSA QAKLKGDMSA
DTKEERKTDF SSLTGNFSLE NGVATNPDLA MSSPLLRVAG KGSANLLTEG LDYRLTTTLV
NSLKGQGGSE KDALAGIDIP LAITGTFQKP EYALDTQALL NNQLKEETDK AKDKLKDSLL
KKLGGF
|
|---|
| |