Gene Shewana3_2302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2302 
Symbol 
ID4478059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2766330 
End bp2767874 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content51% 
IMG OID639726897 
Productfumarase 
Protein accessionYP_869937 
Protein GI117920745 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00101336 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCTC ACCATGAAAC GTCTGAAAAT GTAGTGATTA AACAAGCCGA CTTTATTGAA 
AGTGTGGCCG ATGCCCTGCA ATACATCTCC TATTATCATC CCAAAGATTT TGTGGATGCC
ATGAGCGAAG CTTATGAGCG TGAGCAAAGT GCGGCGGCGA AGGATGCGAT TGCGCAAATT
TTGATTAACT CGCGTATGTC TGCCGAAGGT AAACGTCCAC TGTGTCAAGA CACGGGTATT
GTGACCACCT TCGTTAAGAT TGGTATGGGG GTTAAGTGGG ACAAAACCGA TATGACTGTG
CAACAAATGG TCGATGAAGG TGTGCGTCGT GCTTATACCA ATCCAGATAA CCCACTGCGT
GCATCGATTG TGGCCGATCC TGCGGGTAGC CGTAAAAACA CCAAAGACAA CACGCCATCC
GTCGTGCATA TCGATATGGT GCCAGGCAAT CACATTGAAG TCGCTATCGC GGCCAAGGGC
GGCGGCAGTG AAAACAAAGC CAAGATGGTG ATGTTAAACC CATCTGACGA TATCGCCGCT
TGGGTTGAAA AAACGCTGCC AACCATGGGC GCGGGCTGGT GTCCTCCAGG TATGCTTGGC
ATCGGTATTG GCGGCACCGC TGAGAAAGCG GCCGTACTCG CGAAAGAAGC ACTGATGGAA
AGCGTGGATA TCCATGAGTT AATGGCGCGC GGTGCAGAAA CCAGCGAAGA AAAACTGCGT
TTAGACATTT TCGAGCGTGC TAACAACCTT GGTATTGGTG CGCAGGGTCT TGGCGGTTTA
ACCACAGTGT TAGACGTGAA AATCAAATCT GCACCTACTC ATGCAGCATC AAAACCTGTG
GTGATGATCC CGAACTGCGC GGCAACTCGT CACGTACACT TCCATTTAGA TGGTTCGGGC
CCTGCTGATC TTGCGCCGCC TACACTCAGC GACTGGCCAG AAATCACCCG CGAAGTGGGC
AGCGATGTGC GACGCGTTAA CTTAGACACA GTCACTCAAG CCGATATCGA GCAGTGGAAG
AGCGGTGAAA CCATTCTGTT AAGCGGTAAA ATGCTCACCG GCCGTGATGC TGCCCATAAA
CGTATCCAAA GCCTGATTGA AAGCGGCGAA GGCTTACCAG AAGGCGTCGA CTTTACTGGC
AAGTTTATCT ACTACGTGGG CCCTGTTGAC CCAGTCGGTA ACGAAGTCGT GGGTCCTGCT
GGCCCAACAA CCGCGACCCG TATGGACAAG TTCACCGATC TGATGCTGGA TAAAACTGGC
CTGATGGGCA TGATTGGTAA GGCTGAACGT GGTCCAGCGA CCGTTGAGTC TATCAAGAAG
CACAAAGCTG TGTACCTGAT GGCTGTGGGC GGCGCGGCTT ACTTAGTGTC GAAAGCCATT
AAGAAATCCC GCGTGGTGGC CTTTGCCGAC TTAGGTATGG AAGCAATTTA CGAGTTTGAC
GTACAAGATA TGCCAGTTAC TGTGGCGGTG GATTCAAACG GCGTGAATGC CCATGAAACT
GGCCCTGCGA TTTGGAAAGT GAATATCGCT AACGCCAAAG CCTAA
 
Protein sequence
MSSHHETSEN VVIKQADFIE SVADALQYIS YYHPKDFVDA MSEAYEREQS AAAKDAIAQI 
LINSRMSAEG KRPLCQDTGI VTTFVKIGMG VKWDKTDMTV QQMVDEGVRR AYTNPDNPLR
ASIVADPAGS RKNTKDNTPS VVHIDMVPGN HIEVAIAAKG GGSENKAKMV MLNPSDDIAA
WVEKTLPTMG AGWCPPGMLG IGIGGTAEKA AVLAKEALME SVDIHELMAR GAETSEEKLR
LDIFERANNL GIGAQGLGGL TTVLDVKIKS APTHAASKPV VMIPNCAATR HVHFHLDGSG
PADLAPPTLS DWPEITREVG SDVRRVNLDT VTQADIEQWK SGETILLSGK MLTGRDAAHK
RIQSLIESGE GLPEGVDFTG KFIYYVGPVD PVGNEVVGPA GPTTATRMDK FTDLMLDKTG
LMGMIGKAER GPATVESIKK HKAVYLMAVG GAAYLVSKAI KKSRVVAFAD LGMEAIYEFD
VQDMPVTVAV DSNGVNAHET GPAIWKVNIA NAKA