| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2286 |
|---|
| Symbol | |
|---|
| ID | 4478043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2748098 |
|---|
| End bp | 2748859 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639726881 |
|---|
| Product | lipoprotein releasing system, ATP-binding protein |
|---|
| Protein accession | YP_869921 |
|---|
| Protein GI | 117920729 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00104581 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGAG ACGTGTTTGG ACATGGAGTT TATCCATGTC ATTTAGAATC AATAGCGAGA
ATCTCAATGC AAGACGTGTT ACTGCAAGTG CAGGCGGTGA GTAAGAGTTA TCACGATGGC
GATGTGACCA CTCAGGTGTT GTCTGAGGTG GATTTACAGG TATTTAAGGG CGAGCAACTG
GCGATTGTCG GTACCTCTGG CTCGGGCAAG AGTACGCTGC TGCATATTAT GGGCACCTTA
GATAAACCCT CCGCGGGCAA AGTCTTGTTA GCGGGTGAGG ATTTATATCA GGTGAGCAGT
GCCCGTCAGG CGCAGATCCG CAACCAAGAT TTAGGTTTTA TTTATCAGTT CCATCACCTT
TTGCCCGAAT TTAGCGCACT GGAAAACGTG GCTATGCCGG CGTTTATTCA AGGCAGAGAC
CGCGCTCAGG CTCAGGCTGA TGCCAAAGTG TTGCTCGAGA GAGTAGGGCT TGGGCACAGA
ATGAGCCATA TTCCCGCCGA GCTTTCGGGC GGTGAGCGTC AACGGGTGGC AATTGCTCGG
GCGCTGATCA ACAAACCCAA ACTCGTGCTG GCCGATGAAC CAACGGGAAA CCTCGATGCC
AAGAGTGGCG AGGCGGTCTA TGAGCTGATC CGCGAATTAG CCAATCAACT CGGAACGGCG
TTTGTGGTGG TGACCCACGA TCCTAAATTG GCGGCGCGGA TGGACAGACA ACTCACCATG
AAGAATGGTT ATCTGCAAGC TGTCGCGGAA CACGCCCAAT GA
|
|---|
| Protein sequence | MMRDVFGHGV YPCHLESIAR ISMQDVLLQV QAVSKSYHDG DVTTQVLSEV DLQVFKGEQL
AIVGTSGSGK STLLHIMGTL DKPSAGKVLL AGEDLYQVSS ARQAQIRNQD LGFIYQFHHL
LPEFSALENV AMPAFIQGRD RAQAQADAKV LLERVGLGHR MSHIPAELSG GERQRVAIAR
ALINKPKLVL ADEPTGNLDA KSGEAVYELI RELANQLGTA FVVVTHDPKL AARMDRQLTM
KNGYLQAVAE HAQ
|
|---|
| |