| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2281 |
|---|
| Symbol | |
|---|
| ID | 4478038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2743349 |
|---|
| End bp | 2743810 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639726876 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_869916 |
|---|
| Protein GI | 117920724 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator)
[TIGR02010] iron-sulfur cluster assembly transcription factor IscR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00598103 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTA CATCTAAAGG TCGTTATGCT GTAACCGCAA TGCTCGATGT GGCCATCCAC
TCGGCTTCGG GACCGGTTCC CTTAGCGGAT ATCTCTGAAA GACAAGGGAT TTCGCTTTCC
TATCTGGAAC AACTCTTCGC AAAGTTACGT AAACATGGCC TAGTGGCCAG TGTCCGTGGT
CCAGGTGGTG GTTATCGCTT AGGCCTCGAA GCTAATGATA TTTCTGTTGG CATGGTGGTC
CATGCCGTTG ACGAGTCTGT CGATGCGACT CGTTGTCAAG GACTAGGCAA TTGCCAGAGT
GGAACTCGCT GCTTAACGCA CTCGCTCTGG GGCGATTTAA GCAAACAAAT TTCAGATTTT
TTAGATGGTA TCAGTCTTGC TGGCTTAATG CAGAAACGAG ATGTGCAGTT TATCTCGCTT
AAGCAAGACA CTATGCAAAA GGAGCAAAGA GTCAGCTTAT AG
|
|---|
| Protein sequence | MKLTSKGRYA VTAMLDVAIH SASGPVPLAD ISERQGISLS YLEQLFAKLR KHGLVASVRG
PGGGYRLGLE ANDISVGMVV HAVDESVDAT RCQGLGNCQS GTRCLTHSLW GDLSKQISDF
LDGISLAGLM QKRDVQFISL KQDTMQKEQR VSL
|
|---|
| |