| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2167 |
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| Symbol | |
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| ID | 4478371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 2598640 |
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| End bp | 2600544 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 639726763 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_869803 |
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| Protein GI | 117920611 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000207311 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATGT CTAAATCATA TCCCATCTTT TTATTGCTGA TTTTTTTAGG GCTGTTTGGT
TGGATTTATC ACAACGAAAA TAATCAGCTC CAAGTGCAGC AACAGCAAGA GCTCAATAAC
TTTAAACAGT ACATGGCTAA CTTTGCCCAA TGGCAAGGCA ATGGCGCCGA GCTTTACCAA
AGTATTGCCA GTCATTATCC GCTGCAATTT TTCCAATATG TCGATGATAC CGACGGACAA
CTTAATTTTA CTCAGGGCGA TCTCAACTCC CAGAGCCCTC ACCCGCTAGC CGGATTGTTT
GCCTTAGATT TATCCCATAC GCAAAAACTG GCTGCGGGGC GTTTACAGGT TAAGTTGAGT
GCCGATCAAG CGATTGAAAA TGCCATCACC AGTACCCAGC AGTTGGGGAT GGTATTGGTG
CTGACCTATA TCCTGTTGAT GGTTGTTTTT ATTTTGCTTA TCAACAGATT AAAATCAGCT
ATCCGTTATG CGGCAGAGTA TATCTCCCAC ATTCCTGACA TGAATTTTTC CGCCATTGAA
TCTTCGAAGC TGAACGGTGA AATGGCGCCA GTGAAATTAG CCTTAGAAGA CTGCCGAACT
CAGCTCAAAT CAAAACTGGA TTTGCTCACC CAAGAAAATC AAAAATTACA TAAAGCCGCC
TATCAAGACC CTGTGACGGG TTTTGGCAGT CGTCCACCTT TTACCACTAA ATTAGAAAGC
ATCAGTAACC GCAGCATCCC ACAACTCGGG CTGTTAGCCA TGGTCAAAGC GACTGAGCTT
TCCCATGTGA ACCAATTGCA AGGCCGCTCA GCGGGTGATG ATTATCTTGC GAGTGTAGCT
AATTGCATTC GTAAGGCTTG TTCAAAATAT CCCGATTCGG AGTGTTACCG TGTCTCCAGT
GCCGATTTTG CGATTTTTTT ACCTGATTTA GTGTTAAAAG ACGGCCCTAA GTTTTTAGAA
CAACTTAAAG TGTTCCTCGA TGAATACCAA CAAATGACCA GAGCCGAATC GGTGGCGCAC
ATTGGCTTAG TGCCTTATCA ACAGGGGACC GACCCCGTTA ATTTGCTCTC CTTAGCAGAC
ACCGCCGTCA GCATAGCGCA AACCTTAGGT CCTAATAGTT TCCATATTCA AGAAAAGCTC
AACGGCGACG AGCAGTTTGG GGATGACCGT TGGAAAGTGG CAATCAACGA CTTAATCACC
CGCCAAGCGT TGAAGTTTTT CCAACAGCCG ATTCAACCTT GCCGCAATGA TGTCGAGGTC
TATCGCGAGT TACTCGCACG TTTTTACAAC AACGAAGGCA AGTTTTTGCC TACCACCACC
GTCATCGCCA TGGCCGAGCG CCACGGCATG AGCACCGAAT TAGATAAATT AGTGGTGATC
AGCACATTAA GAATGCTTAA AGAAAATCCG ACCATTAGCG GCAACTTTGG CGTCAATATC
AGCGCCTTTT CGGCCCATCA AGAACTGTTT GTCGGCTGGT TAAGGGATGT GTTGAGTAAA
CATAAATACA TCGCTTCTCG CCTAGTGTTT GAGATCAACG AATCCGGCAT GCAGGCCAAT
TTAGGCGCCA GCTATAAGTT TGTCCGTGAA GTACACAGTG TCGGTTCACG GGTCTCAATT
GAGCGCTTTG GGATGAGCTT TACCTCCTTC AAATTCTTCA GTGAAGTGCG TCCAGACTAC
ATTAAGCTCG ATGGCAGCTA CACCTCATCA ATCGATGAAG ACAGCAATAA TAAGTTCTTC
GTGCGGATGA TGGTCGATGT GGCACGACGC ATCGGCATTC GAGTTATCGC CACCAGTGTC
GAGCGCCAAG AGGAAAAACT GACCCTCGAA AAACTCCTCG TCGATGGTTT GCAGGGCTAT
TATATTGCCC AGCCACAGGC CATTACCTTA ACTGACCAAA TTTAA
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| Protein sequence | MAMSKSYPIF LLLIFLGLFG WIYHNENNQL QVQQQQELNN FKQYMANFAQ WQGNGAELYQ
SIASHYPLQF FQYVDDTDGQ LNFTQGDLNS QSPHPLAGLF ALDLSHTQKL AAGRLQVKLS
ADQAIENAIT STQQLGMVLV LTYILLMVVF ILLINRLKSA IRYAAEYISH IPDMNFSAIE
SSKLNGEMAP VKLALEDCRT QLKSKLDLLT QENQKLHKAA YQDPVTGFGS RPPFTTKLES
ISNRSIPQLG LLAMVKATEL SHVNQLQGRS AGDDYLASVA NCIRKACSKY PDSECYRVSS
ADFAIFLPDL VLKDGPKFLE QLKVFLDEYQ QMTRAESVAH IGLVPYQQGT DPVNLLSLAD
TAVSIAQTLG PNSFHIQEKL NGDEQFGDDR WKVAINDLIT RQALKFFQQP IQPCRNDVEV
YRELLARFYN NEGKFLPTTT VIAMAERHGM STELDKLVVI STLRMLKENP TISGNFGVNI
SAFSAHQELF VGWLRDVLSK HKYIASRLVF EINESGMQAN LGASYKFVRE VHSVGSRVSI
ERFGMSFTSF KFFSEVRPDY IKLDGSYTSS IDEDSNNKFF VRMMVDVARR IGIRVIATSV
ERQEEKLTLE KLLVDGLQGY YIAQPQAITL TDQI
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