Gene Shewana3_2154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2154 
Symbol 
ID4478350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2580903 
End bp2583182 
Gene Length2280 bp 
Protein Length759 aa 
Translation table11 
GC content49% 
IMG OID639726742 
Productacyl-CoA dehydrogenase 
Protein accessionYP_869790 
Protein GI117920598 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.136842 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.840722 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGACGA TTATAATTAT TGCCCTGATT GCGATTATTG CGCTGTTTGC AGTAAAGAGC 
CTTCGGATGC AATTTATCAC CCAGCCTGTG TTTCATTTCT TTAAAAAAGT ATTACCGCCA
TTATCCGATA CCGAGCGCGA AGCGATGGAA GCGGGTGATG TGTGGTGGGA AGGCGAGTTA
TTCCGTGGTA ACCCAAACTG GAATACCCTG CACAGCTACG GTAAACCAAC CCTGACGGCT
GAAGAGAAAG ACTTTATCGA TAATCAGGTG ATGACCGCCC TGAAGATGAT CGATGATTTC
GACATTGTGC ATAATCGTAA GGATTTGCCA CCAGAGCTGT GGGACTACTT TAAGAAAGAA
GGCTTTTTTG CGCTGATCAT CCCGAAAAAG TTTGGTGGTC GTGCGTTTTC TGCCTACGCC
AACTCGACGA TTGTGAGTAA ATTAGCCAGC CGCAGTGTGA GTGCTGCGGT CACTGTGATG
GTGCCAAACT CATTAGGCCC AGGTGAGCTT TTGACTCATT ATGGTACCAA AGAGCAAAAG
GAGCGCTGGT TACCTGCATT AGCTAAGGGT GATGAGATCC CATGTTTTGC ATTAACTGGC
CCTGAAGCCG GTAGTGATGC GGGCGCTATC CCCGATGTGG GTATTGTTTG CCGTGGTGAG
TTTAACGGTG AAGAAGTTTT AGGCCTGAAA TTAACCTGGG ACAAGCGTTA TATCACCCTC
GCACCTGTGG CAACCGTATT AGGTTTAGCC TTCCAGATGC GCGACCCTGA TGGTTTGCTT
GGCGATAAAA AGAATTTAGG TATTACCTGC GCCTTGATCC CTACCGATCA TCCTGGTGTG
GTGATTGGGC GTCGTCATAA TCCGCTTAAC ATGGCGTTTA TGAACGGGAC TACTAAGGGC
GAAGAAGTCT TTATTCCGCT GGATTGGATT ATCGGTGGTC CTGAGTTTGC GGGCAGAGGC
TGGCGCATGC TGGTTGAATG TTTATCGGCG GGTCGCGGTA TTTCTCTGCC TGCATTGGCT
ACCGCTTCTG GCCATATGGC GACCAAAACC ACCACGGCTT ACAGCTATGT GCGTCAGCAA
TTTGGTATGG CGATTGGCAA CTTTGAAGGT GTGCAAGAAG CGCTGGCGCG CATTATCGCT
AATACCTATC AATTGGAAGC GGCGCGCCGT TTAACCACAA CGGGTATTGA TCTTAAAGTT
AAACCTTCAG TGGTGACGGC GATTGCTAAG TTCCACATGA CTGAACTGGG CCGCGCTGTG
ATGAACGATG CGATGGATAT TCAGTCGGGT AAGGGTATCC AATTAGGACC TAAAAACTAC
TTAGGCCACC CTTATATGTC GAATCCTATT TCGATTACCG TTGAAGGGGC GAATATTTTG
ACGCGTTCCT TGATGATCTT TGGTCAAGGT GCGACCCGTT GCCATCCTTA TGTGTTGGCT
GAAATGGAAG CCGCGGCGAT GGAAAACGAG CACGATGCGC TCGAGCGTTT CGACTCGCTG
TTAATGGGCC ATATGGGTTA CGCCACTCGC AACGCGTTCA GTGCCTTATT CAACGCCTTG
ACTGCCAGCC GTTTCGGCAG TGCGCCGGTG AGCGGCGATA CCAAGCAATA TTACAAAGAC
ATGTCGCGCA TTTCATCGGC ATTAGCCTTG ATGACAGATA TTTCAATGCT GATCATGGGC
GGCGATTTGA AGCGTAAGGA AATGTTGTCG GCACGTATGG GAGATGTGTT AAGCCAGCTG
TACTTAGGCT CAGCCACCTT AAAACTGTTT GAAGACAATG GCCGTCAACA GGACGATTTA
CCCGCGGTGC GTTATGTGAT GGCAAATCGC TTGCACTTAG CAGCTAAAGC GCTTGAAGAA
GTGATCCGTA ACTTCCCGAA CCGCCCATTT GCATGGCTGC TACGTGCACT GATTTTCCCC
ATCGGCAACC ATTTCAATGC GCCTAGCGAT AAAATGGCGA CTGAATTGGT CTCTGGCATG
TTAAAACCGA GTCCTGCTCG TGAACGCATT ACTTTCCTAT GCCCAGAGTT TGAAGGCGAC
GTGGGTGGTA TTGCAGAGGT TGAACAGGCC TTCGTGGCGC AATATGCCTG TAAAGAGATT
TACAAGAAGC TCAAGAAAGC ACAACGCGCC GGTGAGTTGC CAGCCAAAGT GCCTAACTTA
GTGTTATTTG CTAAAGCGCT GGAGCAGGGC ACTGTGACTC AAGATGAGCA TCAAAAGCTG
TTACATGCCG ATAAGCTGCG CTTAGCGGCC ATCAATGTGA ATGATTTTGA AGCCTTATAA
 
Protein sequence
MLTIIIIALI AIIALFAVKS LRMQFITQPV FHFFKKVLPP LSDTEREAME AGDVWWEGEL 
FRGNPNWNTL HSYGKPTLTA EEKDFIDNQV MTALKMIDDF DIVHNRKDLP PELWDYFKKE
GFFALIIPKK FGGRAFSAYA NSTIVSKLAS RSVSAAVTVM VPNSLGPGEL LTHYGTKEQK
ERWLPALAKG DEIPCFALTG PEAGSDAGAI PDVGIVCRGE FNGEEVLGLK LTWDKRYITL
APVATVLGLA FQMRDPDGLL GDKKNLGITC ALIPTDHPGV VIGRRHNPLN MAFMNGTTKG
EEVFIPLDWI IGGPEFAGRG WRMLVECLSA GRGISLPALA TASGHMATKT TTAYSYVRQQ
FGMAIGNFEG VQEALARIIA NTYQLEAARR LTTTGIDLKV KPSVVTAIAK FHMTELGRAV
MNDAMDIQSG KGIQLGPKNY LGHPYMSNPI SITVEGANIL TRSLMIFGQG ATRCHPYVLA
EMEAAAMENE HDALERFDSL LMGHMGYATR NAFSALFNAL TASRFGSAPV SGDTKQYYKD
MSRISSALAL MTDISMLIMG GDLKRKEMLS ARMGDVLSQL YLGSATLKLF EDNGRQQDDL
PAVRYVMANR LHLAAKALEE VIRNFPNRPF AWLLRALIFP IGNHFNAPSD KMATELVSGM
LKPSPARERI TFLCPEFEGD VGGIAEVEQA FVAQYACKEI YKKLKKAQRA GELPAKVPNL
VLFAKALEQG TVTQDEHQKL LHADKLRLAA INVNDFEAL