Gene Shewana3_2087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2087 
Symbol 
ID4476333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2504405 
End bp2505256 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content50% 
IMG OID639726672 
ProductLysR family transcriptional regulator 
Protein accessionYP_869723 
Protein GI117920531 
COG category[R] General function prediction only 
COG ID[COG5006] Predicted permease, DMT superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.632032 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000953173 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTGTTT TTCGTCTATT TACGCTGACA ACGCTCACCA TGTTTGCCTT TGCCTGTAAC 
TCGATACTTT GCCGGCTCGC GTTAAAGGAT GGCAGTATCG ATGCGGGCAG CTTTACCCTG
ATCCGGTTGT TATCGGGTGC CATCATGCTC TGGCTATTAA GCCTTAACAA ACCTGCGCTG
GAGGCCAAGG GACATTGGGG CTCAGCCTTG GCATTGTTTG TCTACGCAGC CGGATTTTCC
TACGCCTATA TCAATATGAC GGCCTCAATG GGTGCGCTGT TACTCTTTGG CGCCGTACAA
GCCACCATGA TTGGCTATGG GCTGTACCGA AAAGAAATCT TTAATACCAG ACAATGGCTT
GGATTGGCCT GCGCCGCTGC CGGTTTGATT TTTCTGCTGT TACCTGGGCT GTCGGCGCCG
CCACTAATGA GTTCATTGCT GATGATAAGC GCTGGGGTCG CTTGGGGGAT TTATTCGATT
AAGGGTAAGG GAGCCAAGCA TCCCATTCCT GTCAGTGCAG GCAACTTTAT CCGCACTGTG
CCGATGGCAC TGTTATTAAT GTTATTAGTT CGAGATCCCT TAGCAGTAAG TCAGATGGGA
ATTATCTATG CGTTAGCCTC GGGCGCCATC GCTTCAGGCT TAGGTTATGC GATTTGGTAT
TCCATTTTAC CTTTATTGTC ATCCACCTAC GCCGCCACTG TACAGTTGAG TGTGCCGTTA
ATTGCCGCGG TTGGCGGAGT GCTATTGCTG GGTGAACCCC TAAGCCTTCG ATTACTGCTA
GCCTCCTGTG CCATCCTCGG TGGCATTGCA CTTGTTGTCC TCAGCAAATC TGAACCACAA
AATAAAAGCT AA
 
Protein sequence
MTVFRLFTLT TLTMFAFACN SILCRLALKD GSIDAGSFTL IRLLSGAIML WLLSLNKPAL 
EAKGHWGSAL ALFVYAAGFS YAYINMTASM GALLLFGAVQ ATMIGYGLYR KEIFNTRQWL
GLACAAAGLI FLLLPGLSAP PLMSSLLMIS AGVAWGIYSI KGKGAKHPIP VSAGNFIRTV
PMALLLMLLV RDPLAVSQMG IIYALASGAI ASGLGYAIWY SILPLLSSTY AATVQLSVPL
IAAVGGVLLL GEPLSLRLLL ASCAILGGIA LVVLSKSEPQ NKS