Gene Shewana3_2043 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2043 
Symbol 
ID4476288 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2451269 
End bp2453197 
Gene Length1929 bp 
Protein Length642 aa 
Translation table11 
GC content47% 
IMG OID639726627 
Productthreonyl-tRNA synthetase 
Protein accessionYP_869679 
Protein GI117920487 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0441] Threonyl-tRNA synthetase 
TIGRFAM ID[TIGR00418] threonyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000275607 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0123196 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGTAA TTACACTTCC TGATGGTAGC AAGCGCGAGT TTGCACATCC CGTATCGACT 
CTCGATGTTG CCGCTGATAT CGGCCCTGGT CTTGCTAAAG CCTGTATCGC TGGTCGCGTG
AATGGCGAAC TAAAAGACGC TTGCGATCTG ATCGAAACCG ATGCTGAACT TTCTATTATT
ACCGCTAAAG ACGAAGAAGG TATTGAAATC CTTCGCCATT CTTGCGCGCA TTTATTAGGC
CATGCAATCA AGCAATTATG GCCACAAACC AAGATGGCGA TCGGTCCTGT GATCGATAAC
GGCTTCTATT ACGACATCGA TCTTGAGCAC AAGCTGACTC AAGAAGATAT CGAAGCCCTC
GAAAAACGTA TGCTGGAATT GGCGAAAACC AATTACGACG TAGTCAAACG CGTTGTGAGC
TGGCAAGAAG CCCGTGATAC CTTTGCCGCA CGCGGTGAAG AATACAAGAT CGCGATTCTG
GATGAGAACA TCAGCAAAGA TGCAACTCCA GCGCTGTATC ATCACGAAGA ATACACCGAC
ATGTGTCGTG GTCCACACGT GCCAAACATG CGTTTCTGCC ACCATTTCAA ATTGATGAGC
ATTGCTGGCG CTTACTGGCG CGGTAACTCT GAAAACAAGA TGCTGCAACG TATTTACGGT
ACAGCATGGG CGGATAAAAA AGCCCTGAGC ACCCATTTAG CCCGCCTCGA AGAAGCGGCT
AAACGTGACC ACCGTAAAAT AGGTAAGCAA CTTGACCTCT ACCATATGCA AGAAGAAGCA
CCAGGCATGG TGTTCTGGCA TAACGACGGT TGGAGCATCT TCCTCGAATT AGAACGTTTC
ATTCGCCGTA AGTTAAATCA ATACACTTAC CAAGAAGTGA AAGGTCCGTT GATGATGGAC
CGCGTTTTGT GGGAACGTTC CGGTCACTGG GATAAATACT CAGAAGCCAT GTTCACAACC
AGCAGTGAAA ACCGTGAATA TGCGGTTAAG CCAATGAACT GCCCAGGCCA CGTACAGATC
TTCAACCAAG GCTTGAAATC TTACCGTGAT CTGCCACTGC GTATGGCGGA ATTTGGTTGC
TGTCACCGCA ATGAGCCATC AGGTTCACTG CATGGGCTGA TGCGCGTACG TGGTTTTACT
CAAGACGATG CCCATATCTT CTGTACTGAA GATCAAGTTC AAGCAGAAGT TAGCTCTTGT
ATCCAAATGG TATACGACAC TTACTCGACA TTTGGCTTTG AGAACATCGT TGTAAAACTG
TCAACTCGCC CTGAAAAACG TATCGGTGAC GATGCAATGT GGGACAGAGC CGAAGAAGCA
CTCAAGCAAG CCTTACGTGC GAACAATATC GAATTCACCA TTTTACCGGG TGAAGGTGCC
TTCTACGGTC CTAAGATTGA ATTCACGCTG CACGACTGTT TAGACCGTGC ATGGCAATGC
GGTACTGTGC AATTAGACTA CGCATTACCG AGCCGTTTAG GTGCAACTTA TGTCGCCGAA
GATAACAGCC GTCAAACGCC TGTGATGATC CATCGTGCGA TTTTAGGCTC GTTGGAGCGT
TTCTTAGGTA TTTTGATCGA AGAATACGCA GGTCGTTTCC CAACTTGGTT GGCTCCAATG
CAAGTTGTCG TGATGAATAT CACCGACAAA CAGGCTGATT ATGTTGAAGA AGTGGTCAAA
TTCTTCAAAG AACAAGGTAT TCGCGCCTCA TTTGACTTGA GGAATGAGAA AATAGGCTTT
AAAATACGCG AGCACACCTT AAGGCGTGTT CCTTATTTAT TGGTCGTTGG CGATCAGGAA
ATGGAAAATA AGGAAGTTGC GGTGCGTACA CGTGATGGCG TTGACTTAGG TAAGATGCGA
ATTGAAGATT TCGCCGCTAA GATCCATCAA CAAATTTCGC TCCGTAGTCT CAAATTGTTG
GAGGAATAG
 
Protein sequence
MPVITLPDGS KREFAHPVST LDVAADIGPG LAKACIAGRV NGELKDACDL IETDAELSII 
TAKDEEGIEI LRHSCAHLLG HAIKQLWPQT KMAIGPVIDN GFYYDIDLEH KLTQEDIEAL
EKRMLELAKT NYDVVKRVVS WQEARDTFAA RGEEYKIAIL DENISKDATP ALYHHEEYTD
MCRGPHVPNM RFCHHFKLMS IAGAYWRGNS ENKMLQRIYG TAWADKKALS THLARLEEAA
KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WSIFLELERF IRRKLNQYTY QEVKGPLMMD
RVLWERSGHW DKYSEAMFTT SSENREYAVK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGC
CHRNEPSGSL HGLMRVRGFT QDDAHIFCTE DQVQAEVSSC IQMVYDTYST FGFENIVVKL
STRPEKRIGD DAMWDRAEEA LKQALRANNI EFTILPGEGA FYGPKIEFTL HDCLDRAWQC
GTVQLDYALP SRLGATYVAE DNSRQTPVMI HRAILGSLER FLGILIEEYA GRFPTWLAPM
QVVVMNITDK QADYVEEVVK FFKEQGIRAS FDLRNEKIGF KIREHTLRRV PYLLVVGDQE
MENKEVAVRT RDGVDLGKMR IEDFAAKIHQ QISLRSLKLL EE