Gene Shewana3_1954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1954 
Symbol 
ID4479751 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2326104 
End bp2326850 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content52% 
IMG OID639726536 
Producthypothetical protein 
Protein accessionYP_869591 
Protein GI117920399 
COG category[S] Function unknown 
COG ID[COG0217] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01033] DNA-binding regulatory protein, YebC/PmpR family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.04417 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGGTC ATAGTAAGTG GGCCAACATT AAACACCGCA AAGCAGCGCA AGATGCCAAA 
CGCGGTAAAC TCTTTACCAA ATTTATCCGC GAGTTAACGG TTTCAGCCCG TGAAGGTGGC
TCGGATCCCG ATTCAAACCC GCGTCTGCGT ATCGCTATCG ATAAAGCGCT TGGCGGCAAC
ATGACCCGCG ACACCATTGA GCGCGCAATT AAACGTGGCG CCGGTGAGCT TGAAGGTCAG
CAACTCGAAA CCATTATTTA CGAAGGCTAT GGCCCTGGCG GCACCGCTGT GATGGTCGAG
ACCATGACAG ATAACCGTAA CCGTACCGTG AGCGGCGTGC GTAATGCCTT TAGTAAATCG
GGTGGGAATT TAGGGACCGA TGGTTCGGTT GCCTATTTGT TCACTAAGCG CGGCGTGTTG
TCCTATGCGC CGGGTACTGA TGAAGACGCC CTGATGGACG CGGCGCTAGA AGCGGGCGCC
GAAGATGTGG TGAGTTACGA TGATGGTGCA ATTGACGTAT TTACCGAACC GACCGAGTTT
TATGGGGTGA AAGATGCCCT CGATGCGGCG GGATTTGTCA GTGATAACGC CGAAATCGCG
ATGATAGCCT CGACCAAAGC GGAGTTAGAT GCCGAGACGG CGGAGAAGTT TATGCGTCTT
ATCGATACCC TCGAAGAGCA CGATGATGTG CAAGAGGTGT ATCATAATGC CGAAATCTCC
GATGAGATTA TGGAAAGTTT AGGGTAA
 
Protein sequence
MAGHSKWANI KHRKAAQDAK RGKLFTKFIR ELTVSAREGG SDPDSNPRLR IAIDKALGGN 
MTRDTIERAI KRGAGELEGQ QLETIIYEGY GPGGTAVMVE TMTDNRNRTV SGVRNAFSKS
GGNLGTDGSV AYLFTKRGVL SYAPGTDEDA LMDAALEAGA EDVVSYDDGA IDVFTEPTEF
YGVKDALDAA GFVSDNAEIA MIASTKAELD AETAEKFMRL IDTLEEHDDV QEVYHNAEIS
DEIMESLG