| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1953 |
|---|
| Symbol | aspS |
|---|
| ID | 4479750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2324112 |
|---|
| End bp | 2325887 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639726535 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | YP_869590 |
|---|
| Protein GI | 117920398 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.154117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAGTC ATTATTGTGG AGACGTCAAT AAGTCTCACG TTGGACAAGA AGTTACCTTG
GTAGGTTGGG TTAATCGTAG CCGTGATTTG GGTGGCGTGG TCTTTTTAGA TTTAAGAGAC
AGAGAAGGTC TGGTCCAAGT GGTTTACGAT CCAGATTTAC CTGAGGTGTT CAATGTGGCC
AGTACGCTGC GCGCCGAGTT TTGTGTGCAG GTAAAAGGCG TGGTTCGTGC CCGTCCTGAT
AGCCAAGTCA ACGCGCAAAT GAAGACCGGC GAAATTGAAG TATTAGGTAA AGAACTGACG
ATCATCAACA GTTCTGAGCC GCTGCCGCTG AGCTTAGATA ACTATCAAAA CAACAGTGAA
GAGCAGCGTC TAAAGTACCG TTATTTAGAT TTACGTCGCC CAGAAATGGC GCAGCGCTTA
ATGTTCCGCG CGAAAGTGAC CAGTGCCGTG CGTCGTTTCC TCGACTCAAA CGGCTTCTTA
GATATCGAAA CGCCTATTCT GACCAAGGCG ACGCCAGAAG GTGCCCGTGA CTATTTAGTG
CCAAGCCGCA CTTACAAAGG TCAATTCTTC GCGCTGCCAC AATCACCACA GCTGTTTAAG
CAGTTGCTGA TGATGTCAGG CTTTGACCGT TACTATCAAA TCGTAAAATG CTTCCGTGAC
GAAGATTTAC GTGCTGACCG TCAGCCAGAA TTTACTCAAA TCGATATCGA AACCTCATTT
ATGACGTCTG AGCAGGTGAT GGCTAAGACC GAAGAGATGA TGCGTGGTCT GTTCCTTGAG
ATGCTGAACG TCGATTTAGG CGAATTCCCA CGTATGACCT ATAACGAAGC CATGCGTCGT
TTCGGTTCAG ATAAGCCAGA TTTACGTAAC CCATTAGAAC TGGTTGACGT GGCTGACTTG
CTCAAAGAAG TGGAGTTTGC GGTATTCTCA GGCCCAGCTA ATGACGAAGA AGGCCGTGTT
GCGGCGCTGC GTATTCCAGG TGGTGCGAGC TTATCCCGTA AGCAAATCGA TGATTACACT
AAGTTTGTCG GTATTTACGG TGCTAAAGGT TTAGCTTGGA TGAAGCTAAA CGACCTGACT
CAAGGGTTAG AAGGCATTCA ATCACCTGTG CTGAAGTTCT TGAACGAAGG CATTGTGAAC
GAAATCATCA GCCGTACTGG CGCACAAACG GGCGATATCA TCCTGTTTGG TGCCGATAAC
GCGACTGTGG TTGCTGAATC TATGGGCGCA CTGCGTCTTA AAGCCGGTGA AGACTTTAAT
CTGCTCGAAG GTCAATGGCG TCCACTGTGG GTGGTTGACT TCCCAATGTT TGAGAAGATC
AACGGCAGCT TCCACGCGGT TCACCATCCG TTTACTGCGC CACGTGGCGT GACACCACAA
GAGCTGGAAG CCAATCCGGC TAACCGTGTG TCAGATGCCT ACGACATGGT ATTAAACGGC
TGTGAATTAG GTGGTGGTTC AGTTCGTATT CACAACCAAG AGATGCAATC TGCGGTATTC
CGTATTCTTG GCATTACCGA TGAAGAAGCG AAAGAGAAAT TCGGCTTCTT ACTCGAAGCG
CTGCGCTACG GTACGCCACC ACATGCGGGT CTGGCATTCG GTTTAGACCG TATTATCATG
CTGATGACGG GCGCAAGCTC AATCCGTGAT GTGATGGCTT TCCCGAAAAC CACCACAGCG
GCGTGTCCGT TAACCAATGC CCCAGGTTTT GCTAACCCAC AACAATTAGC TGAACTAGGT
ATTTCCGTGG TGAAAGCCGC GAAGACTGAA GACTAA
|
|---|
| Protein sequence | MRSHYCGDVN KSHVGQEVTL VGWVNRSRDL GGVVFLDLRD REGLVQVVYD PDLPEVFNVA
STLRAEFCVQ VKGVVRARPD SQVNAQMKTG EIEVLGKELT IINSSEPLPL SLDNYQNNSE
EQRLKYRYLD LRRPEMAQRL MFRAKVTSAV RRFLDSNGFL DIETPILTKA TPEGARDYLV
PSRTYKGQFF ALPQSPQLFK QLLMMSGFDR YYQIVKCFRD EDLRADRQPE FTQIDIETSF
MTSEQVMAKT EEMMRGLFLE MLNVDLGEFP RMTYNEAMRR FGSDKPDLRN PLELVDVADL
LKEVEFAVFS GPANDEEGRV AALRIPGGAS LSRKQIDDYT KFVGIYGAKG LAWMKLNDLT
QGLEGIQSPV LKFLNEGIVN EIISRTGAQT GDIILFGADN ATVVAESMGA LRLKAGEDFN
LLEGQWRPLW VVDFPMFEKI NGSFHAVHHP FTAPRGVTPQ ELEANPANRV SDAYDMVLNG
CELGGGSVRI HNQEMQSAVF RILGITDEEA KEKFGFLLEA LRYGTPPHAG LAFGLDRIIM
LMTGASSIRD VMAFPKTTTA ACPLTNAPGF ANPQQLAELG ISVVKAAKTE D
|
|---|
| |