Gene Shewana3_1902 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1902 
Symbol 
ID4478210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2258464 
End bp2259051 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content49% 
IMG OID639726484 
Productperiplasmic nitrate reductase subunit NapC 
Protein accessionYP_869539 
Protein GI117920347 
COG category[C] Energy production and conversion 
COG ID[COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 
TIGRFAM ID[TIGR02161] periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.526119 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value8.39402e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTAGATA AACTCAAAAA GATCTGGCAA GTTCTCAATC GTCCGAGTGT GCACTACAGT 
TTAGGGTTTT TAACCTTAGG TGGCTTTGTG GCGGGGGTGA TCTTCTGGGG GGGCTTTAAC
ACCGCGCTTG AAGCCACCAA CAAAGAAGCC TTCTGTATCG GTTGCCACGA AATGGAAAAT
AACGTCTATC AAGAGTTACA GTCGACTATC CATTTCACTA ACCGCAGTGG TGTGCGTGCG
ACTTGTCCTG ACTGCCACGT GCCGCACAAC TGGACCGATA AGATTGCCCG TAAGATGCAG
GCATCGAAAG AAGTGTGGGG TAAAGTGTTT GGTACCATCA ATACCCGCGA AAAGTTTGAG
AACAAACGTC GCGAGTTGGC CGAACATGAA TGGGAACGGT TAAAGGCAAA CGACTCGCTT
GAGTGCCGTA ACTGCCATAA CTTTACCTAT ATGGACTTTA CCAGACAGTC GCCACGCGCC
GCCCAGATGC ACTCGACATC CTTGGCCAGT GGTGAGAAAA CCTGTATCGA TTGCCATAAA
GGGATTGCTC ACCATCTTCC CGATATGGCA GGGGTTGAAG GCTTCTAA
 
Protein sequence
MLDKLKKIWQ VLNRPSVHYS LGFLTLGGFV AGVIFWGGFN TALEATNKEA FCIGCHEMEN 
NVYQELQSTI HFTNRSGVRA TCPDCHVPHN WTDKIARKMQ ASKEVWGKVF GTINTREKFE
NKRRELAEHE WERLKANDSL ECRNCHNFTY MDFTRQSPRA AQMHSTSLAS GEKTCIDCHK
GIAHHLPDMA GVEGF