Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1879 |
Symbol | |
ID | 4478187 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 2225805 |
End bp | 2227508 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639726461 |
Product | nickel-dependent hydrogenase, large subunit |
Protein accession | YP_869516 |
Protein GI | 117920324 |
COG category | [C] Energy production and conversion |
COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCAAGC GCGTTGTTAT CGACCCTATC ACCCGTATTG AGGGTCATTT ACGTATCGAA GTCGAAGTTG ATGAGAATAA TGTCATCAAC AAAGCATGGT CATCCTCTAC CCTGTGGCGT GGTATTGAAG TCATCCTCAA GGGCCGCACA CCAATGGACG TGGGGCTGAT CGTGCAGCGG ATCTGCGGTG TTTGTACCTA TTCCCACTAT CGCTGTGGTA CCGAAGCGGT GGAAAATGCC TTAGGCATTC AAATCCCGTT AAACGCTAAA TACCTACGTT CCTTAATGCA AACCTCGCTC TATATGCATG ACCATATAGT GCACTTCTAT CATCTACACG GTTTAGACTG GGTGGATGTT GTGTCAGCTT TAAGTGCCGA TCCCGCCAAG GCTGCACAGG TTGCCCTTAA ATATACCGAC AAGCCGATTG CTGCGGGCGA AGGCGAATTA AGAGCGGTGC AAGAGCGGGT TAAAGGCTTT GTCGAAACTG GCAAACTCGG CCCCTTCGCT AACGCTTACT GGGGCAATGG CACCTATAAA TTTACCCCAG AGCAAAACCT GATTGCCCTG TCGCATTACC TCAAAGCCCT TGAAGTACAA AGGGTTGCCG CCGAAATGCT GGCGATTTTC GGGGGTAAAC AGCCGCATCC ACAATCATTG GTTGTGGGCG GTGTGACCTC AGTGCGCGAT ATGTTAAGCC CTGCGCGCCT GCAGGAGTGG AAACAAAAAC ACGCGATTGT GACTGACTTT ATTCTGCGTG CCTATCAAGC AGATATCGTC ATGGCGGCGG AAGCCTTTGG TGGTGAAGCC AGCGTACTTG GCGGCGTGAA CGTTAAAAAC TTCATGGCGA CCAATGACTT TGTGCTTGCC AATGGCGAAT ACCTGTTCGA CCAAGGCGTG ATTATGAAGG GCGACTTAGC GGGCGTAAGC GACATCAACC CAGAGCTAAT CGCCGAAGAC GTCAGCCATG CCTGGTATAG CGCAGATGCG CCGCAGCATC CCTACGATGG CACAACTATC CCCAACTACA CCGGCTTTGT TGAGCGCGAT ACGGTTTATG GCAAACTGCC CACCTTAGAT GGCGATGGCA AATACTCTTG GGTGAAATCG CCACGTTACC AGGGCGAACC CGTGGAAGTG GGTCCATTGT CCTGCCTGCT GGTGAGCTAT GCCCGTGGCA ATAAAGTGGT GGTCGATGCC GTCAATGCGC TGCTGGCTCG CACGGGTCTG CCGGTTGAAG CCCTGTTCAC CACCTTAGGC CGTACCGCAG CGCGGATGCT GCAAACCGTT ATCGTGGCGC AGGAAGGTCT GAAAACCTTC GATGCCCTGT TAACCAATAT TCAATCCGAT GAAACCACCT ATGTGAAACC CCATATCGAC CCAAGTCGTG AATATGTGGG TCACGCCATG ATTGAAGCAC CACGCGGCAT GTTAAGCCAC TGGATCCGCA TCAAAAACGG CGTCATTGAG AACTATCAAG CCGTGGTGCC CACCACTTGG AACGCAGGCC CAGTGGATGC CAATGGCAAG ATTGGCCCCT ACGAAGCCTC ACTCATTGGT TTGAAACTGG AAGATCCCAC TAAGCCCCTT GAGGTGATAC GTATTATTCA CTCATTCGAC CCTTGCATGG CGTGTTCAGT ACACGTGATG GATTTCAAAG GTCAAGCACT GAGCGAGTTC CGTGTCAGCC CCAATGGTCA ATAA
|
Protein sequence | MSKRVVIDPI TRIEGHLRIE VEVDENNVIN KAWSSSTLWR GIEVILKGRT PMDVGLIVQR ICGVCTYSHY RCGTEAVENA LGIQIPLNAK YLRSLMQTSL YMHDHIVHFY HLHGLDWVDV VSALSADPAK AAQVALKYTD KPIAAGEGEL RAVQERVKGF VETGKLGPFA NAYWGNGTYK FTPEQNLIAL SHYLKALEVQ RVAAEMLAIF GGKQPHPQSL VVGGVTSVRD MLSPARLQEW KQKHAIVTDF ILRAYQADIV MAAEAFGGEA SVLGGVNVKN FMATNDFVLA NGEYLFDQGV IMKGDLAGVS DINPELIAED VSHAWYSADA PQHPYDGTTI PNYTGFVERD TVYGKLPTLD GDGKYSWVKS PRYQGEPVEV GPLSCLLVSY ARGNKVVVDA VNALLARTGL PVEALFTTLG RTAARMLQTV IVAQEGLKTF DALLTNIQSD ETTYVKPHID PSREYVGHAM IEAPRGMLSH WIRIKNGVIE NYQAVVPTTW NAGPVDANGK IGPYEASLIG LKLEDPTKPL EVIRIIHSFD PCMACSVHVM DFKGQALSEF RVSPNGQ
|
| |