Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1861 |
Symbol | |
ID | 4477920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 2202821 |
End bp | 2204782 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639726443 |
Product | TonB-dependent receptor |
Protein accession | YP_869498 |
Protein GI | 117920306 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0473101 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGCAC AACCCGATTT TACCCCTCGT CTGTCGCGAT TTTCCCGCAA AGCCCTCCCC TTAGCTATCA GCCTCGGCCT CAGTGCTATA TCGGCAACGG CTCTGGCCAA CAATAGCGCC ACAGGCGAGA TGGAACGTAT GGTGATCACT GCGACGCAAA CCAAACACTC TGAGCTCTCG GCGCCAGCAT CAGTATCAGT GATTAATCGC ACCGAGCTTG AAGCCTTAGT GATTGATGAC CTCGCCAGTG CAGTGCGTTA TTTACAGGGA GTGAATATCA GTGAAGGTAC GCCCTATGGC CGCAATGAAA TCAGCCTTAG GGGTCTGGAT TCTGACTACA CCTTAATCTT GATCAATGGC CGCCGCGTCA ATTCTCGCGA GGCGCTCACC TCCAACTATG GCAATGACTT CGACCTGTCA TCTATCCCCA TGTCTGCTAT CGAGCGCATT GAGTTAGTTC GCGGCCCCAT GTCATCCCTC TATGGCTCCG AAGCCTTAGG TGGCGTAGTC AACGTTATCC TGCGCCAACC AACCGAAACT TGGCAAACCA GCGTCGGCGT GCAATACGAC ACACCAACCA GTGGTGAAGG TGGCGATAGC ACTAAATACA ACTTCTACAC AAGCGGCGCA CTCGTGAAGG ATAAACTGCT GGCGAACTTG ATTGTCGATA GCAATAAACG TGATGCCTGG CGTTCAGACT TAAAGCCAAC TATCGATGCA CTCGAAGACA GGGATGAGAT CAGCGCCTTA GCCAATCTGC AATGGTTAAT CGACAAGCAG CAGGATCTGC AATTCGATAT CAGTTACGCC AGCGATGAGC GTGAGTCCGA CTGGAATAAC TACGGCACGA TTCTGACCAA CAACCAACAG GCGGAGCGCA TTAGCTCAGG TTTGACCCAT AACGGCCGTT GGGACTGGGG TGATACTCGC CTGCGTTACT ATTATGAAAA TGTCGAAGTA ACCGATGATT CGGCGCTGAT CGCGCAAATT GGCCATATCA CTCAAACCAA CCACAATCTC GACGGCCAAA CCACAGTGTT ACTCGGCGAG CATATGCTGA CGGGCGGCGC CGAATACCGT TGGACCAAGC TTGAGAACAG CCGCAATATT TTAGGCGATG GCACCTTAGA CGACAGTCAG TCGGCACTGT ATCTGCAGGA TGAGTTCAGT TTAGGCGAAC TGAGTCTCAC CCTCGGTGGC CGTGTCGATC ACCACGATGT GTATGGCACT GAGTTTAGTC CTCGCCTCTA TCTGGTTTAT CCACTCAGCT CCGAATGGGT GATCAAAGGT GGCGGTGGTA AAGCCTTTAA AGCACCGAAT ATGTCGCAGT CCCAAGCCGA TTATATTATC CCAGCCTGTC GTGGTGCCTG CTCTGTGGCG GGCAATCCCG ACTTACAGCC CGAAACCTCG GTGAACTACG AGCTATCGAC CCAATACCAA ACCGCAGATT TTGGCGGCTC CGTCACCTAT TTCCATAATG ATGTAGAAAA CAAAATCATC ACCGAGACCT GGGACAGAAC CCCGGGCGCC GTGCTCACCT ATCAAAACGT TAACGAAGCT AAGATCACTG GTTGGGAATT ACAGGCATGG TACGACTTAA CCGACAGTTT AAGTATCAGT GGTAACTACA GTAAAACCGA TGCCAAGGAT AAACAAAATG GCGCGCCTTT TACTTTAACG CCTGAAGATA GCTACAACCT GAAACTGCAA TGGCAGGCGT TAGAGGGATT ATCCACCTTT ATTGCTTACC ACTACACGGG TGAACAATAT CTGAGAACCA ACGTTAAATC AGATGGTTAT GGTTCACTTG ATTTAGGTGT GAATTATCAA ATCAACCCTA TGTTTAGAGT AAAACTAGGG GTGACTAACT TGACGGATGC CGAGCGCGAT CAAATTGCCA CCGATTTGGA TTACATTCAA AAGAGCCGCA GCGTGTATGC TGGGGTAACG GCAAGCTTCT AA
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Protein sequence | MPAQPDFTPR LSRFSRKALP LAISLGLSAI SATALANNSA TGEMERMVIT ATQTKHSELS APASVSVINR TELEALVIDD LASAVRYLQG VNISEGTPYG RNEISLRGLD SDYTLILING RRVNSREALT SNYGNDFDLS SIPMSAIERI ELVRGPMSSL YGSEALGGVV NVILRQPTET WQTSVGVQYD TPTSGEGGDS TKYNFYTSGA LVKDKLLANL IVDSNKRDAW RSDLKPTIDA LEDRDEISAL ANLQWLIDKQ QDLQFDISYA SDERESDWNN YGTILTNNQQ AERISSGLTH NGRWDWGDTR LRYYYENVEV TDDSALIAQI GHITQTNHNL DGQTTVLLGE HMLTGGAEYR WTKLENSRNI LGDGTLDDSQ SALYLQDEFS LGELSLTLGG RVDHHDVYGT EFSPRLYLVY PLSSEWVIKG GGGKAFKAPN MSQSQADYII PACRGACSVA GNPDLQPETS VNYELSTQYQ TADFGGSVTY FHNDVENKII TETWDRTPGA VLTYQNVNEA KITGWELQAW YDLTDSLSIS GNYSKTDAKD KQNGAPFTLT PEDSYNLKLQ WQALEGLSTF IAYHYTGEQY LRTNVKSDGY GSLDLGVNYQ INPMFRVKLG VTNLTDAERD QIATDLDYIQ KSRSVYAGVT ASF
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