| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1626 |
|---|
| Symbol | |
|---|
| ID | 4476590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1915257 |
|---|
| End bp | 1915895 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639726209 |
|---|
| Product | pyridoxamine 5'-phosphate oxidase |
|---|
| Protein accession | YP_869265 |
|---|
| Protein GI | 117920073 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0259] Pyridoxamine-phosphate oxidase |
|---|
| TIGRFAM ID | [TIGR00558] pyridoxamine-phosphate oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0502858 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATC TCAGTGATAT TCGCCGCGAA TACACCAAAG GCGGCTTAAG ACGCGCCGAT
TTACCTCAAA ATCCCATGCA GCTATTCGAG TTATGGATGA CGCAAGCTCG CGATGCTGAG
CTCAGCGACC CAACGGCAAT GTGTGTTGCC ACAGTCGATG AGCATGGTCA GCCCTACCAG
CGGATAGTGT TATTAAAGCG TTTCGATGAC ACGGGATTTG TTTTCTTCAC TAACCTAGGC
AGTCGTAAGG CGCAGCAGAT CGCAACCAAC AATAAAGTGA GCCTGCATTT CCCTTGGCAT
CCGATTGAAC GCCAAGTATC GATTCTCGGT GAGGCGCAGC CACTCTCTAC TGCCGAAGTA
CTGAAATACT TTATGACCCG TCCCAAGGAT AGCCAGATTG CCGCTTGGGT GTCACAGCAA
TCGAGTAAAC TGAGCGCGCG ACAAGTACTC GAAGGCAAGT TCTTTGAGAT GAAAGCCAAA
TTTGCCAAGG GCGATGTGCC ATTACCAAGT TTTTGGGGCG GCTACTTGGT CAAGCCCTCG
AGTATTGAGT TTTGGCAGGG CGGGGAGCAC AGACTGCATG ACCGCTTCCT CTACACTCGC
CAAGCGGATG AATGGGTCAT TGACCGTTTA GCACCTTAA
|
|---|
| Protein sequence | MTDLSDIRRE YTKGGLRRAD LPQNPMQLFE LWMTQARDAE LSDPTAMCVA TVDEHGQPYQ
RIVLLKRFDD TGFVFFTNLG SRKAQQIATN NKVSLHFPWH PIERQVSILG EAQPLSTAEV
LKYFMTRPKD SQIAAWVSQQ SSKLSARQVL EGKFFEMKAK FAKGDVPLPS FWGGYLVKPS
SIEFWQGGEH RLHDRFLYTR QADEWVIDRL AP
|
|---|
| |