Gene Shewana3_1609 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1609 
SymboluvrC 
ID4476569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp1889881 
End bp1891710 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content50% 
IMG OID639726189 
Productexcinuclease ABC subunit C 
Protein accessionYP_869249 
Protein GI117920057 
COG category[L] Replication, recombination and repair 
COG ID[COG0322] Nuclease subunit of the excinuclease complex 
TIGRFAM ID[TIGR00194] excinuclease ABC, C subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.67064e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0818954 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGACAG GTTTTAACGC CCAGAGTTTT TTACGCATGG TCTCATCCTC TGCTGGGGTT 
TATCGCATGT ATGACGTCAA AGGTGACGTC ATCTATGTGG GTAAAGCCAA AGATCTTAAG
AAGCGCTTAT CCTCCTATTT CCGTAAAAAC CTTGGGAATG TGAAAACCCA AGCGCTGGTG
TCCCATATCC ATCATATCGA TGTGACGCTG ACCCACAGCG AGACCGATGC GCTGCTGCTT
GAGAATGACT ATATCAAGCA GTACATGCCC AAATACAATG TGTTACTGCG GGACGATAAG
TCATACCCTT ATATTTTCTT GAGCCAACAC GAGCATCCAC GCCTCGCATA CCATCGCGGA
CCGCAGCGGG AAAAGGGCTA TTACTTTGGG CCTTATCCTA ATGGCGGCGC GGTGCGTGAA
AGTTTGCACT TGATGCAAAA GCTGTTTCCT ATCCGCCAGT GTGATGATCT CTATTATAAA
TCCCGCACTC GTCCCTGCCT GCAGTACCAG TTATCCCGTT GCAGTGCACC TTGCGTCGGT
AAGGTCAGTA ATGCGGAGTA TGACGAGCAG GTTAAACTCG CCAGTTTGTT CCTTAAGGGA
AAAGATAAGC AAGTCATCAG TGAACTTGTG GCAAAGATGG AAGAGGCCGC CGGGCAGCAA
GCCTATGAGC AAGCTGCGCG CTTTCGCGAT CAAATTATGG CGCTACGCCG GGTGGCCGAG
CAGCAAGAAG TCTCAGGTAA TACTGGGGAT ATGGATGTTA TCGGTGTGCA CTACGCTTCG
GGCATCGCGT GTTTTCACCT ATTATTTATC CGCGAAGGTA AAATTTTTGG TAGCCGCAGC
TATTATCCAA CGGTGCCCGC GCAAACAGAT ATCGAAGAAG TCTTACGTTC CTTCCTATTA
CAGTTTTATT TAAATGCCGA TATTCAACGC ACAATTCCTA AGGAAGTGGT GATAAGCCAT
CACTTTGAAG AATTGCATGA GTTAGAAGCG GCCGTCTCTG AGGCGTTAAA TAAAAAGTTC
AGCATCAAAA CCAATGTGCG CGCCGACAGG GCAAGCTTTT TGCGCCTCGC GCTGACCAAT
GCCACCAATG CGGTGATGAC GCGTTTGTCC CATAAAAACA CCGTTGAACA GCGTTTTGTC
TTGCTGGAGG AAATCCTCGA GCTTAATGCG CCAATTCAGC GGATGGAGTG TTTCGATATC
AGCCATACCA TGGGGGAGAG CACGGTAGCC TCCTGCGTGG TGTTTAACCG CGAGGGGCCC
CATAAGGCCG AATACCGCCG CTACAATATT GAAGGGATTA CACCTGGCGA TGATTATGCT
GCGATGAAAC AAGCTATTAG TCGCCGATTT GATAAAATCG ATGCCAGCGG CAAAATTCCT
GACATCTTAT TTATCGACGG TGGCTTGGGC CAGCTGCGTA TCGCCCAGCA AATAGTGGAT
GAGAAATTCG TCAATTTAGA TAAAGCGCCG CAACTGATTG GGGTGGCAAA GGGGGAGAGC
CGTAAACCCG GGCTTGAAAC CTTAATCTTC GGCGACACAG AAACGAGCTT TTCCCTTGAG
GATGACTCGC CAGCGCTGCA CCTTATTCAA CATATTCGCG ATGAGTCCCA CCGCTTTGCG
ATTACAGGCC ATCGCAATCG TCGCCAGAAA ACCCGTAACA CCTCGACGCT CGAGTCGATT
CCTGGCATTG GTCCTAAGCG GCGCAAGGCG TTATTGCAAC ATCTTGGTGG TTTACAGGAA
GTGAAGGGCG CGAGTGTGGC CGAGTTAGCG AAAGTACCCG GTATTAGCAT AGAAATGGCA
CAAACCATTC ATGATGCATT GCGAGGGTGA
 
Protein sequence
MSTGFNAQSF LRMVSSSAGV YRMYDVKGDV IYVGKAKDLK KRLSSYFRKN LGNVKTQALV 
SHIHHIDVTL THSETDALLL ENDYIKQYMP KYNVLLRDDK SYPYIFLSQH EHPRLAYHRG
PQREKGYYFG PYPNGGAVRE SLHLMQKLFP IRQCDDLYYK SRTRPCLQYQ LSRCSAPCVG
KVSNAEYDEQ VKLASLFLKG KDKQVISELV AKMEEAAGQQ AYEQAARFRD QIMALRRVAE
QQEVSGNTGD MDVIGVHYAS GIACFHLLFI REGKIFGSRS YYPTVPAQTD IEEVLRSFLL
QFYLNADIQR TIPKEVVISH HFEELHELEA AVSEALNKKF SIKTNVRADR ASFLRLALTN
ATNAVMTRLS HKNTVEQRFV LLEEILELNA PIQRMECFDI SHTMGESTVA SCVVFNREGP
HKAEYRRYNI EGITPGDDYA AMKQAISRRF DKIDASGKIP DILFIDGGLG QLRIAQQIVD
EKFVNLDKAP QLIGVAKGES RKPGLETLIF GDTETSFSLE DDSPALHLIQ HIRDESHRFA
ITGHRNRRQK TRNTSTLESI PGIGPKRRKA LLQHLGGLQE VKGASVAELA KVPGISIEMA
QTIHDALRG