| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1450 |
|---|
| Symbol | |
|---|
| ID | 4479667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 1680961 |
|---|
| End bp | 1682247 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639726020 |
|---|
| Product | aromatic hydrocarbon degradation membrane protein |
|---|
| Protein accession | YP_869090 |
|---|
| Protein GI | 117919898 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2067] Long-chain fatty acid transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000153151 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000946875 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAT TCAACAAGAC GCTGCTTGCC GTTGCAGTTG CACTGGCGAG CTCACAAACT
TTCGCTTCGG GTTTCCAATT AAACAGCCAA TCAGCTACAG GTATGGGCCG TGCTTTTGCT
GGTGACGCAG TCATCGCCGA TAACGCCTCT GTGTTATCGC GTAACCCAGC AGCGATGGCA
TTATTCGATA AAGATGCAAT CTCTTTAGGC CTAACCTATG CCGATATTAC TGTTGACGTT
AAAGACGTTA ACTTTGGCGG TGGCGCCTAT GACTTAGGCA GTATCGACGA TGCGGGTAGC
TCTAAAGTTA TCCCGAACAT TTTCTACATC CACCCAATCG ACGATAAATT CGCCGTGGGT
TTTGCCGCAT TCTCTAACTT CGGTACAGGT ACTGACGCCA GCTCTTTGTC TAAGAACAAG
CCTGCAGCAC CTTTCGACCT ACTCGGTGAA ACTGAAGTCA CTACAGTTAA CTTCAACGCC
AGCGTGTCAT ACCGCATCAA CGATATGTTC AGCATCGGTG CGGGTTTGGA TGCCGTCTAC
GGCGAAGGCC GCTTAACCCG TAATATGGGC ACTACGCCTC TGGTTGACGT AGACGCTGAT
GGTTGGGCTT TCGGTGGTAT CGTGGGTGCC ACTGTTGAAT TAAATAAAGA TAACCGTTTC
GGTATCAGCT ACCGTTTCAG CCCAACCGTA AATGTTGAAG GCGATATCAA TACTGTCTCG
ATGACAACCA TTCCTGGTGT AGGTGCAGTA CCAGTTACGA CCAGTTTCGA TAGCTTAGAT
GTACCGTTAG CGGATATTTT CCAAGTAGCC GGTTTCCATC AGATCACACC TAAGTTTGCA
CTGCACTACA CTGCGCAGCA CACCCAATGG GGCAACTTCG ATCAAATCAC TGCGAAAGAC
GGTACTGCAA CGATTGCCGC TGTGGGTGTG ACTCAACCCG TAGGTGACGT AGCCCTGAAA
GAATACCAAT GGAAAGATTC ATGGTTATTC AGCGTAGGTG GTACATACAC CATCAACGAA
CAATTCACTG TTCGTGCAGG TTATATGCAT GACCAAGGCG TTGTGGACGA AATCAGCTCG
ATTTCATTCC CAGACTCTGA CCGTAACTGG TACACAGCGG GTATGAGCTA CCACATCAAC
CCACAAAACA CCGTTGACTT AGGTATCGCG TACATTAAAG GTGAAGAAGT TCACCTGATC
GAAAACAGCG CTATCACAGG CCCTGTGAAC GCCGTAACTG AATCAAAAGG TATGTACTAC
TCAGTACAGT ACAGCTACCA GTTCTAA
|
|---|
| Protein sequence | MKSFNKTLLA VAVALASSQT FASGFQLNSQ SATGMGRAFA GDAVIADNAS VLSRNPAAMA
LFDKDAISLG LTYADITVDV KDVNFGGGAY DLGSIDDAGS SKVIPNIFYI HPIDDKFAVG
FAAFSNFGTG TDASSLSKNK PAAPFDLLGE TEVTTVNFNA SVSYRINDMF SIGAGLDAVY
GEGRLTRNMG TTPLVDVDAD GWAFGGIVGA TVELNKDNRF GISYRFSPTV NVEGDINTVS
MTTIPGVGAV PVTTSFDSLD VPLADIFQVA GFHQITPKFA LHYTAQHTQW GNFDQITAKD
GTATIAAVGV TQPVGDVALK EYQWKDSWLF SVGGTYTINE QFTVRAGYMH DQGVVDEISS
ISFPDSDRNW YTAGMSYHIN PQNTVDLGIA YIKGEEVHLI ENSAITGPVN AVTESKGMYY
SVQYSYQF
|
|---|
| |