Gene Shewana3_1375 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1375 
Symbol 
ID4478283 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp1588920 
End bp1591433 
Gene Length2514 bp 
Protein Length837 aa 
Translation table11 
GC content44% 
IMG OID639725930 
Productpolysaccharide export protein 
Protein accessionYP_869015 
Protein GI117919823 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0193694 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.8911e-06 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGTTACAAC AATTCAAAAA ATACATCAAA GCGGTTCCCA AAACCGCAAT ATTAGTAGGC 
ATCACTGCCA CGATATTGAT GGGCACATCG GCGCAAGCTA TTACGCCCTC TCCGCAGATG
ATAGAACAAT TCAAACAACT ACCTAAGTCA GAGCAAGAAC GTTTAGCTCG CCAATACGGT
ATTGATCCGT CAATGATTAC GGGGTCCTCA ACTACTGCTA CTGTTGTTGA AAACCCAACT
GTAGTTACGC CACGAACGGA AACTGGTAAT AACGTCATCG ATCAATCTGA GGACGATAAA
CTTAACCAGG CAACCAAAAC GGAAGCTAAG GTTGAAGCGA TTGAAAGCAA AAAAGAAGAT
CAGCTAAAAC GCTTTGGCTA TGACTTATTT GCTGGTTCTC CAAGTACGTT TGCTCCCGTT
TCTGACGTAC CAGTGCCTGC TGAATACATG ATGGGCCCAG GTGATACCTT AAATGTGCAG
TTTTTTGGTA AAGAAAATAA TCAGTTCACG TTAACCGTGG GCCGTGATGG TGCAGTGCAA
TTCCCTAACT TGGGGCCTAT CTCACTAGTA GGCTTAACCT TTGCTGAAAC ACGCGAGCTA
TTACAACAAA AAATCAGCCA AAGCATGATA GGTATTGAGT CCAATATCAC TATGGGTGAG
TTGCGTTCAA TCCGGATTTT TGTGGCTGGT GATGCTTACA AACCTGGCTC TTACACTGTG
TCGAGTTTAT CGACCATTAC TCAAGCGCTG TTTATCTCGG GTGGCGTAAA CCAAATCGGT
AGCTTGCGTG ATATCCAATT AAAGCGCTCT GGTAAAACTA TTGGCCGTTT AGACTTATAT
GATTTATTGC TTCGCGGCGA TGCGTCAGGC GATATGCGTT TACAATCCGG TGATGTGGTA
TTTGTTCCAT CTACTGGGGG GACAGTGAGT GTTATAGGTG AAGTGCGTCG CCCTGCTATT
TACGAGCTTA AAAATAACGA AACCATGGCC GATGTGATTA ATATGGCTAG TGGTTTAAAC
CCAGGTGCAT ATCCCAAAGC CAGTACCATT GAACGTTATA GTCGTGAAGC GGTAAAAACC
GTGGTAAGTG TTGATTTAAC CGAAAATTCA GGCTTAAGTA CGTTAGCGAA AAATGGCGAT
TTACTTAATG TTCGCTCTGC TTCAAGCCGT ATTGATAATG CTATTACGGT CTCGGGTGCA
GTAATCCGCC CAGGTAAATA TCAATGGACA AATGGGCTAA CAGTTGCCGA TTTATTGCCT
TCCATTTGGG GGGATTTAAC CATCTCCGCA GATTTGGATT ACAGCTTATT GGTAAGAGAA
ATCAACCAAC GTGGTGATAT CGAAGTCGAG CGCATCAACC TCGGTCGCGC AATTGGTGAG
CCAAAATCAC ATTACAACCC CACACTAAAA CCACGAGATT CGGTCATTGT ATTTGACTAT
GCCGATCGTG AATCGCTGCT TAAGCCCATT ATTAAAAAGC TAAAAGAGCA AAGCCGTTTT
GGCGATGCCG CTAAACTGGT TAATATCAAT GGGAATGTAC GCTTCCCTGG TCAGTATCCA
ATAACGGTTA ATGCCGATGT TAAAGAGTTA CTTATAGCTG CAGGCGGGCT AGAAGAAGGT
GCATATACCC TATCAGCAGA GCTGACTCGT CAACAAGTGT CTGAGCAAAA TGGGGTTAAA
GTAGAACATG TACAGCTTAG CTTGGATCGC GTTATGCAAA ATGATCCGGC AGCCAATATC
AAACTGCAAA GCCGTGACAT CTTAACCGTA CGTACGTTGC CAGACTGGCA AGAAACTCGC
TGGGTCACCA TTAAAGGTGA AGTTAAATTC CCTGGCACTT ACAGTATCCA GCGCGGCGAA
ACCTTAAAAC AAGTGCTTGC CCGTGCTGGT GGTATGACGA GTGATGCTGC ACCACGCAGT
GCAGTCTTTT TACGCAAATC GATCCAACAA AAAGAACAGC AAGAACTTGC AAAGCTTGCC
GATGAATTGC GCCGGGAGAT TGCTGCAAAA GCCTTGACCA AAGATACGCC TACCATTGGT
TATAACGATG CACAAATGAT GTTAAATCAA TTGGAAAACG TTAAAACAGT TGGTCGCTTA
GTCGTCGATG TTAATGCGAT TGAATTAGGC ATCGAAAGTG CTGATTTAAT GTTGGAAGAT
TCTGATGCCT TATATGTTCC TGCTATAAAT CAAACAGTAT CAGTAATGGG GCAAGTGCAG
CATCCAAGTA CTCATCGCTT TAAAACTGGA TTAACGTTTG AACAATATCT AGCGTTATCC
GGCGGTCCAC GTAAACGTGC TGATGAATCT CGCACTTATA TATTAAAAGC TGATGGCTCG
GTACAAATGC CAGAATCTTC ATTGTGGTTT ACTGGCGGTA GCTCAATGGA ACCTGGTGAC
ACCATAGTTG TACCATTAGA TACCGAATAC AAAGATAATC TAACGTTGTG GACTCAAGTT
ACGAGCATTA TCTACAACAC CGCCGTCGCT GTATCCGCAA TATCGGGGAT TTAG
 
Protein sequence
MLQQFKKYIK AVPKTAILVG ITATILMGTS AQAITPSPQM IEQFKQLPKS EQERLARQYG 
IDPSMITGSS TTATVVENPT VVTPRTETGN NVIDQSEDDK LNQATKTEAK VEAIESKKED
QLKRFGYDLF AGSPSTFAPV SDVPVPAEYM MGPGDTLNVQ FFGKENNQFT LTVGRDGAVQ
FPNLGPISLV GLTFAETREL LQQKISQSMI GIESNITMGE LRSIRIFVAG DAYKPGSYTV
SSLSTITQAL FISGGVNQIG SLRDIQLKRS GKTIGRLDLY DLLLRGDASG DMRLQSGDVV
FVPSTGGTVS VIGEVRRPAI YELKNNETMA DVINMASGLN PGAYPKASTI ERYSREAVKT
VVSVDLTENS GLSTLAKNGD LLNVRSASSR IDNAITVSGA VIRPGKYQWT NGLTVADLLP
SIWGDLTISA DLDYSLLVRE INQRGDIEVE RINLGRAIGE PKSHYNPTLK PRDSVIVFDY
ADRESLLKPI IKKLKEQSRF GDAAKLVNIN GNVRFPGQYP ITVNADVKEL LIAAGGLEEG
AYTLSAELTR QQVSEQNGVK VEHVQLSLDR VMQNDPAANI KLQSRDILTV RTLPDWQETR
WVTIKGEVKF PGTYSIQRGE TLKQVLARAG GMTSDAAPRS AVFLRKSIQQ KEQQELAKLA
DELRREIAAK ALTKDTPTIG YNDAQMMLNQ LENVKTVGRL VVDVNAIELG IESADLMLED
SDALYVPAIN QTVSVMGQVQ HPSTHRFKTG LTFEQYLALS GGPRKRADES RTYILKADGS
VQMPESSLWF TGGSSMEPGD TIVVPLDTEY KDNLTLWTQV TSIIYNTAVA VSAISGI