| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1342 |
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| Symbol | fliF |
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| ID | 4479475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1554916 |
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| End bp | 1556601 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639725897 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_868982 |
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| Protein GI | 117919790 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.505742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGTCG GATCAAACGC CGGCGTAATG GACCAAGGGG TCCAACAGGA AAATAAATCC
GGCGTGCTGG GGAGTCTCGG TGGCGTCGAT ATGATGCGTC AAATCACCAT GATTCTAGCA
TTAGCCATTT GTTTGGCGCT CGCCGTGTTT GTCATGATCT GGGCACAGGA GCCTGAGTAC
CGTCCATTGG GTAAAATGGA AACTCAGGAA ATGGTGCAAG TACTCGATGT ACTTGATAAA
AACAAGATCA AATATCAGAT CGAAGTTGAT GTTGTTAAAG TACCAGAAGA TAAATACCAA
GAAGTCAAAA TGATGCTTAG CCGTGCAGGG GTTAATAGTC CTGCTGCATC GACCCAAGAC
TTTCTTACCC AAGACAGTGG TTTTGGTGTG AGCCAAAGAA TGGAACAGGC TCGCCTCAAG
CATAGCCAAG AAGAAAACCT TGCCCGCGCG ATTGAACAGT TACAAAGCGT AAGCCGCGCT
AAAGTGATTT TGGCACTCCC CAAAGAAAAC GTATTTGCCC GTAATACTTC TCAGCCAAGT
GCAACAGTTG TAATTAACAC TCGCCGTGGT GGCTTAGGCC AAGGTGAAGT TGATGCCATC
GTTGATATCG TCGCTTCTGC GGTTCAGGGC TTAGAGCCAT CTCGCGTTAC CGTCACAGAT
TCTAACGGCC GTTTACTGAA CTCTGGCAGC CAAGATGGCA TCTCTGCCAG GGCGCGCCGC
GAGCTTGAGT TGGTTCAACA AAAAGAAGCC GAATACCGAA CCAAGATTGA TTCGATTCTC
TCGCCCATCC TTGGCCCAGA TAATTTCACC TCCCAAGTGG ATGTGAGCAT GGATTTCACC
GCGGTTGAGC AAACCGCTAA ACGTTTTAAC CCTGACTTAC CGTCGCTGCG TAGCGAAATG
ACTGTTGAGA ATAATTCGAC AGGCGGTTCA ACTGGCGGTA TTCCTGGCGC GTTGTCGAAC
CAACCTCCGA TGGAGTCAAA TATTCCTCAG GATGCGACCA AGGCGACAGA AAGCGTGACG
GCAGGTAACT CGCACCGCGA AGCGACCCGT AATTTTGAGT TAGATACCAC CATCAGCCAT
ACCCGTCAGC AAATTGGCGT AGTGCGCCGC GTCAGTGTGT CAGTAGCCGT GGACTTTAAA
CCGGGTGCTG CGGGTGAAAA TGGTCAAGTG GCGCGCGTTG CCCGCACTGA GCAAGAGCTC
ACCAATATCC GCCGTTTACT GGAAGGCGCG GTAGGCTTTA GCGCGCAGCG TGGTGATGTT
TTAGAGGTGG TCACTGTTCC CTTTATGGAT CAATTGGTTG AAGATGTACC TGCGCCTGAG
CTTTGGGAAC AGCCTTGGTT CTGGCGTGCC GTTAAGTTAG GTATCGGTGC CTTAGTTATC
TTAGTGCTGA TCCTTGCTGT GGTGCGCCCA ATGCTGAAAC GCTTAATCTA CCCAGACAGT
GTGAACATGC CTGAAGATTC AAGATTGGGT AATGAGCTGG CCGAGATTGA GGATCAATAC
GCTGCCGACA CCTTAGGGAT GCTCAATACC AAAGAAGCAG AGTATAGTTA TGCCGACGAT
GGCTCAATTC TTATCCCTAA TCTGCATAAA GATGATGATA TGATTAAAGC TATCCGTGCG
CTTGTGGCCA ATGAGCCCGA GCTTTCAACC CAAGTCGTGA AAAACTGGTT ACAAGACAAT
GGCTGA
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| Protein sequence | MIVGSNAGVM DQGVQQENKS GVLGSLGGVD MMRQITMILA LAICLALAVF VMIWAQEPEY
RPLGKMETQE MVQVLDVLDK NKIKYQIEVD VVKVPEDKYQ EVKMMLSRAG VNSPAASTQD
FLTQDSGFGV SQRMEQARLK HSQEENLARA IEQLQSVSRA KVILALPKEN VFARNTSQPS
ATVVINTRRG GLGQGEVDAI VDIVASAVQG LEPSRVTVTD SNGRLLNSGS QDGISARARR
ELELVQQKEA EYRTKIDSIL SPILGPDNFT SQVDVSMDFT AVEQTAKRFN PDLPSLRSEM
TVENNSTGGS TGGIPGALSN QPPMESNIPQ DATKATESVT AGNSHREATR NFELDTTISH
TRQQIGVVRR VSVSVAVDFK PGAAGENGQV ARVARTEQEL TNIRRLLEGA VGFSAQRGDV
LEVVTVPFMD QLVEDVPAPE LWEQPWFWRA VKLGIGALVI LVLILAVVRP MLKRLIYPDS
VNMPEDSRLG NELAEIEDQY AADTLGMLNT KEAEYSYADD GSILIPNLHK DDDMIKAIRA
LVANEPELST QVVKNWLQDN G
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