Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1206 |
Symbol | |
ID | 4477126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 1410316 |
End bp | 1411143 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 639725761 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_868847 |
Protein GI | 117919655 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0281 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAACC TCGAAGGTTT ATTAAAGCAG GCGCCTGATT TGGTCATGAC CTATGGCTTA AAAATCTTAT TTGCCCTCAT TATTTTCTTC GTCGGTAAAT ATTTTTCTGG CGTCGCACAA AAGTTAGTAC GTAAGGTACT CAACAGCCGC AAGATTGACC CAACAGTGGT GTCTTTTGTG GCTAACTTAG CTTGGGCAGT GGTGTTTGTG TTCACCATTA TCGCCACCTT AGGCCAAATT GGCGTACAAA CCGCCTCTTT AGTCGCCGTT ATCGGTGCCG CGGGTTTAGC CGTTGGTTTA GCACTACAAG GTTCTCTGTC TAACTTTGCC TCAGGCGTAT TAATGGTGCT ATTCCGTCCA TGCCGCGTAG GTGATTATAT TGAAGCGGCG GGTATTGCCG GTACTGTTGA TGAAATCACC ATTTTCTCAA CCAAATTACG CACCCCAGAT AATAAAGTGA TTGTGGCGCC AAACTCTTCA ATCATGAATG GCACTATCAC AAACTACTCT GCCTCTGAAA ATCGTCGTAT CGATTTAGTG ATTGGTGTGT CTTATTCTGC GGATATTGCG CAAACCAAAA AAGTATTAAC AGAGATTTTA GATAACAACC AATACGTGCT GAAAGAGCCT GGTTACACCA TAGGTCTTTC TGAATTGGCA AACTCTTCAA TCAACTTTGT GGTTCGTCCT TGGGTTAAAA CCGCCGATTA CTGGACTGCG CGTTTCCAAA TTTTAGAACA AATCAAAAAT GCACTCGATG CAGCGAACAT TGAAATTCCA TTCCCACAAA TGGATATTCA TGTGAAGCAA TTGCCTGAGA GCAAATAA
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Protein sequence | MENLEGLLKQ APDLVMTYGL KILFALIIFF VGKYFSGVAQ KLVRKVLNSR KIDPTVVSFV ANLAWAVVFV FTIIATLGQI GVQTASLVAV IGAAGLAVGL ALQGSLSNFA SGVLMVLFRP CRVGDYIEAA GIAGTVDEIT IFSTKLRTPD NKVIVAPNSS IMNGTITNYS ASENRRIDLV IGVSYSADIA QTKKVLTEIL DNNQYVLKEP GYTIGLSELA NSSINFVVRP WVKTADYWTA RFQILEQIKN ALDAANIEIP FPQMDIHVKQ LPESK
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