Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1124 |
Symbol | |
ID | 4477829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1322334 |
End bp | 1323314 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 639725667 |
Product | RNA polymerase, sigma 38 subunit, RpoS |
Protein accession | YP_868765 |
Protein GI | 117919573 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCGCA TAAATAGCAC TGCCGCAGAA GAACTAGTAG ATTTTTCCGT AGATACCGCA GAGTTTGATC TCGATAAAGA GGATATTGCC GCTGATTTAG TTCAAGAACT AGGACTCGAA CAACAGGTTC AAGATGACCT GCAAAAAAAT CTTGATGCCA CTCAGCTCTA TTTAGGTGAA ATAGGATTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTTT ACTTTTCCCG TAAGGCCTTA AAAGGCTGCG AAAAATCCCG TAATCGCATG ATTGAGAGTA ACCTGCGACT CGTGGTTAAA ATTGCCCGTC GTTACAATAA TCGCGGCCTA GCGCTGCTGG ATTTAATCGA AGAGGGTAAT CTTGGCTTGA TCCGTGCGGT GGAAAAATTC GATCCAGAAA GAGGCTTCCG TTTCTCAACC TATGCGACTT GGTGGATCAG ACAAACGATT GAACGTGCCA TCATGAATCA AACCCGCACG ATTCGCTTGC CAATCCATGT TGTAAAAGAA CTCAACGTGT ATTTACGTAC GGCTCGGGAA TTAGCGCAAA AACTTGACCA CGAACCTACG GCAGAAGAAA TTGCCGAAAA ACTGCAAGTA TCCAGTGTTG ACGTCAGCCG TATGCTGAAG CTCAATGAGA AGATCACCTC TGTCGATATC CCCTTAGGTG GCGATAACGA CAAGGCGTTA CTCGATGTGC TGGCCGATGA CGACAACGTA GGCCCTGACT ACAAAGTACA AGATGAAGAC ATTTCAAACT CAGTGGTGAA ATGGCTTAAT GAACTCAATA CCAAGCAAAG AGAAGTGTTA GCGCGCCGCT TTGGTTTGTT AGGTTATGAA CCCTCAACCC TTGAAGACGT CGGTGCTGAA ATTGGCCTCA CCCGTGAACG TGTTCGCCAA ATTCAAGTGG AAGCCCTAAA ACGCCTACGT GATTTGCTGG GCGCTCAAGG TCTCTCTGTA GAGGCACTCT TTAGAAACTA A
|
Protein sequence | MSRINSTAAE ELVDFSVDTA EFDLDKEDIA ADLVQELGLE QQVQDDLQKN LDATQLYLGE IGFSPLLSAE EEVYFSRKAL KGCEKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE LAQKLDHEPT AEEIAEKLQV SSVDVSRMLK LNEKITSVDI PLGGDNDKAL LDVLADDDNV GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ IQVEALKRLR DLLGAQGLSV EALFRN
|
| |