Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1118 |
Symbol | ispD |
ID | 4476453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1317457 |
End bp | 1318206 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639725661 |
Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
Protein accession | YP_868759 |
Protein GI | 117919567 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACCG TATTAGAGGC CGCGCCGCAG GTCGAAACCC AAGTTGCAGT TCAAATTGAT CCTTTCTCGC ACCATGTGGT GGCGATTGTG CCCGCCGCGG GGATTGGCAG CCGCATGGGC GCGGGCAAAC CCAAACAATA TTTAACCTTG CTGGGACAAA GCATTCTGGC TCATACCTTA GATAAGTTAT TATCCCATCC GCAAATTAAC CAAGTGATTG TGGCGCTGCA TCCTGAGGAT ACCAAGTTTG CCGCGTTGCC GCAGGCCAAG CATCCCAAGC TGGTAACTGT CATTGGCGGT TCTGAGCGTG CCGACTCGGT GCTGGCGGCA CTCGATAAGG CGCCTGATAA TGGTTGGGCT TTAGTTCACG ATGCGGCCAG ACCCTGCCTG ACGGCGCAAG ACATTGATAA ATTGTTGGCA TCGCGGGTGC ACTTTCCCCA AGGGGCGATT TTAGCCATGC CTGTGCGGGA TACCATGAAG CGCGCCAATA GCTTAGGTGA AATTAGCTCG ACTGTTTGCC GCGATAATCT CTGGCATGCG TTGACACCGC AGTTATTCCC AACCTCCTTG TTGCGATTAC ATTTAAAAGC CGCGCTTGCC GCGGGGGCTG TCGTGACCGA TGAAGCCTCG GCGATGGAGT GGGCGGGCAT TTCCCCTGGT TTGGTCGCGG GGCGGGCGGA TAACATTAAA GTCACCCATC CCGATGATTT GGAGTTGGCA GAACTTTTTT TACTGCGCGC GAATGCTTGA
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Protein sequence | MDTVLEAAPQ VETQVAVQID PFSHHVVAIV PAAGIGSRMG AGKPKQYLTL LGQSILAHTL DKLLSHPQIN QVIVALHPED TKFAALPQAK HPKLVTVIGG SERADSVLAA LDKAPDNGWA LVHDAARPCL TAQDIDKLLA SRVHFPQGAI LAMPVRDTMK RANSLGEISS TVCRDNLWHA LTPQLFPTSL LRLHLKAALA AGAVVTDEAS AMEWAGISPG LVAGRADNIK VTHPDDLELA ELFLLRANA
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