| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1094 |
|---|
| Symbol | glyA |
|---|
| ID | 4476429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1288418 |
|---|
| End bp | 1289671 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639725637 |
|---|
| Product | serine hydroxymethyltransferase |
|---|
| Protein accession | YP_868735 |
|---|
| Protein GI | 117919543 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.412028 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAAA AAGATATGAA TATCGCAGAT TATGATCCGG AACTGTTCAA CGCAATTCAG
AACGAAACTC TGCGTCAAGA AGAGCATATT GAGCTGATTG CTTCTGAAAA CTACACCAGT
CCACGCGTGA TGCAAGCGCA AGGTTCACAA TTAACCAACA AGTACGCCGA AGGTTATCCT
GGCAAGCGTT ACTACGGTGG TTGTGAGTAT GTGGACGTAG TTGAAACCTT AGCGATTGAG
CGTGCAAAAC AATTGTTTGG TGCGACTTAC GCAAACGTGC AACCTCACTC AGGTTCTCAA
GCAAACAGCG CCGTTTACAT GGCATTGTTA AAACCAGGCG ATACCGTTTT AGGTATGAAC
CTCGCTCACG GTGGTCACTT GACCCACGGT TCGCCAGTAA ACTTCTCCGG TAGACTGTAC
AACATCATTC CTTACGGCAT CGATGAATCA GGCAAAATCG ACTATGACGA AATGGAACGT
CTGGCGGTTG AACATAAGCC TAAGATGATG ATCGGTGGTT TCTCTGCTTA CTCAGGCATC
GTTGACTGGG CAAGAATGCG CGAAATTGCA GACAAAATCG GTGCTTACCT GTTTGTCGAC
ATGGCGCACG TTGCGGGTCT TATCGCCGCT GGTGTGTATC CAAACCCAGT GCCACACGCG
CACGTTGTGA CCTCAACCAC TCACAAGACC TTAGCCGGTC CTCGTGGCGG TATCATTCTG
TCTGCTGCCG ATGATGAAGA GTTATACAAG AAGCTGAACT CTGCGGTATT CCCAGGCGGT
CAAGGCGGTC CTTTGATGCA CGTTATCGCA GGTAAAGCGG TAGCCTTCAA AGAAGCTTTA
GAGCCAGAGT TCAAAGCTTA CCAACAACAA GTGGTTAAGA ATGCTAAAGC CATGGTTGAA
GTGTTCTTAG AGCGCGGTTA CAAGATCGTT TCTGGCGGTA CTGACAACCA CTTAATGCTG
GTGGACTTAA TCGGTCGCGA CCTGACTGGT AAAGAAGCCG ATGCCGCTTT AGGTAGCGCC
AACATCACAG TAAACAAAAA CTCTGTGCCA AATGACCCAC GTTCTCCATT CGTGACCTCT
GGTGTACGTA TCGGTACGCC TGCGATCACT CGCCGTGGCT TTAAAGAAGC TGAAGCGAAA
GAGTTAACCG GTTGGATCTG TGACATCCTC GACGATGCCC ACAACCCAGC GGTCATCGAG
CGCGTTAAAG GCCAAGTATT GGCACTGTGC GCCCGTTTCC CTGTTTACGG TTAA
|
|---|
| Protein sequence | MLKKDMNIAD YDPELFNAIQ NETLRQEEHI ELIASENYTS PRVMQAQGSQ LTNKYAEGYP
GKRYYGGCEY VDVVETLAIE RAKQLFGATY ANVQPHSGSQ ANSAVYMALL KPGDTVLGMN
LAHGGHLTHG SPVNFSGRLY NIIPYGIDES GKIDYDEMER LAVEHKPKMM IGGFSAYSGI
VDWARMREIA DKIGAYLFVD MAHVAGLIAA GVYPNPVPHA HVVTSTTHKT LAGPRGGIIL
SAADDEELYK KLNSAVFPGG QGGPLMHVIA GKAVAFKEAL EPEFKAYQQQ VVKNAKAMVE
VFLERGYKIV SGGTDNHLML VDLIGRDLTG KEADAALGSA NITVNKNSVP NDPRSPFVTS
GVRIGTPAIT RRGFKEAEAK ELTGWICDIL DDAHNPAVIE RVKGQVLALC ARFPVYG
|
|---|
| |