| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1035 |
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| Symbol | |
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| ID | 4479380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1209065 |
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| End bp | 1211164 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639725578 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_868676 |
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| Protein GI | 117919484 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000390234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000630128 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAATCCAA TTGTAAAGAG TTTTGAGTAT GGTCAACATA CAGTCACCCT GGAAACAGGT
GTTATTGCAC GTCAAGCAGA CGCTGCCGTT TTAGCTAGCA TGGGTGACAC GACAGTGTTA
GTCACTGTTG TTGGTAAAAA AGAAGCTGAA GCAGGCCGTG ACTTCTTTCC TCTGACTGTT
AACTATCAAG AAAAGACCTA CGCAGCAGGT AAAATTCCTG GTGGTTTCTT TAAGCGTGAA
GGCCGTCCTT CAGAAGATGA GACATTAATC GCTCGCCTGA TCGACCGTCC AATTCGTCCT
CTTTTCCCTA ATGGCTTCAC AAACGAAGTT CAAGTGATCA TTACTGTTGT ATCTGTCGAT
CCACAAATCG AGCCGGATAT TATTTCAATG ATCGGTACTT CGGCTGCGCT TGCTATTTCG
GGTATCCCAT TCAGCGGCCC ATTAGGTGCA GCGCGCGTGG GTTACATCAA TGGCGAATAC
GTACTGAACC CAACAGTGAC TCAGTTAGAA AGCAGCCAAC TGAACCTAGT TGTTGCCGGT
ACTGAGAGCG CGGTATTGAT GGTTGAGTCA GAAGCTCAAG CATTACCAGA AGAAGTGATG
TTAGGCTCAG TGGTTTATGG CCATGACCAA CAACAAGTGG TTATCAAAGC GATTGCTGAA
TTCAAAGCAG AAGCGGGTAA ACCAGCTTGG AATTGGACTG CACCAGTTGC CAATGAAGCC
TTAGTTGCTC AAGTTAAAGA ATTAGCTGAA GACGGTTTAG CGCAAGCGTA TCAAATTCAA
GTTAAACAAG ATCGTTATGC TCAAGTTGCT GTGGTTAAAG CCGCTGCTAA AGAAGCACTG
TTGGCTGCAA ACCCAGACGT CGATTTACGT GAAGTTGACG GTTTGCTCGG TAGCTTAGAG
AAGAAAGTGG TTCGTGGTCG CATCATCCGT GGTGAGCCTC GTATCGACGG TCGTGAGCCA
GACATGGTTC GTGCTCTCAG CGTATTAGCA GGCGTATTAC CACGTACTCA CGGTAGTGCA
CTGTTTACCC GTGGCGAAAC TCAAGCACTG GTAACTTGTA CTCTAGGTAC TGAGCGTGAC
GCACAGAAGA TTGATAGCAT CATGGGCGAG CGTACTAACC GCTTTATGCT GCACTACAAC
TTCCCTCCTT ACTCTGTGGG TGAGACAGGT ATGGTGGGTT CACCTAAGCG TCGCGAAATC
GGTCACGGCA AGTTAGCATG GCGCGGTATC AACGCAGTCA TGCCAACGGC TGAAGAATTC
CCATACAGCG TTCGCGTGGT TTCTGAAATC ACTGAATCTA ACGGTTCAAG CTCTATGGCA
TCAGTTTGTG GTACGTCTCT TGCGCTGATG GATGCGGGTG TACCAATCAA GACTTCTGTA
GCGGGTATCG CTATGGGTCT AGTAAAAGAA GGCGACAACT TCGTTGTTCT GTCTGACATC
TTAGGTGATG AAGACCACTT AGGTGACATG GACTTCAAAG TAGCCGGTAC TCGTGACGGT
GTGACTGCAC TGCAGATGGA CATCAAGATC GAAGGTATCA CCAAAGAAAT CATGGAAATT
GCACTGCAAC AAGCCTACGG CGCACGTGTA CATATCCTGA ACGTGATGGA CCAAGCGATT
GGTTCACACC GTGATGATAT CTCTGACCAC GCTCCACGTA TCACAACTAT CAAGATCAAC
CCAGAGAAGA TCCGTGATGT TATCGGTAAA GGCGGCGCGG TTATTCGTGC GCTGACCGAA
GAAACCGGCA CCACTATCGA ACTGGAAGAT GACGGTACTG TGAAGATTGC TTCGTCAAAT
GGCGATGCAA CCCGTGAAGC CATCCGTCGT ATCGAAGAAA TCACTTCAGA AGTTGAAGTG
GGTCGTATCT ACAACGGTAA AGTTATCCGT ATCGTAGACT TCGGTGCCTT CGTTAACATT
CTGCCTGGCA AAGATGGTTT AGTACACATT TCGCAAATCA GCGATGAGCG TGTTGCTAAC
GTCTCTGACC ACCTTGAACT GAACCAAGAA GTTACCGTTA AGGTAATGGA AGTGGATCGT
CAAGGTCGTG TAAGACTGTC AATCAAAGAA GCACAGACTA AAGAAGCCGC TGCTGAATAA
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| Protein sequence | MNPIVKSFEY GQHTVTLETG VIARQADAAV LASMGDTTVL VTVVGKKEAE AGRDFFPLTV
NYQEKTYAAG KIPGGFFKRE GRPSEDETLI ARLIDRPIRP LFPNGFTNEV QVIITVVSVD
PQIEPDIISM IGTSAALAIS GIPFSGPLGA ARVGYINGEY VLNPTVTQLE SSQLNLVVAG
TESAVLMVES EAQALPEEVM LGSVVYGHDQ QQVVIKAIAE FKAEAGKPAW NWTAPVANEA
LVAQVKELAE DGLAQAYQIQ VKQDRYAQVA VVKAAAKEAL LAANPDVDLR EVDGLLGSLE
KKVVRGRIIR GEPRIDGREP DMVRALSVLA GVLPRTHGSA LFTRGETQAL VTCTLGTERD
AQKIDSIMGE RTNRFMLHYN FPPYSVGETG MVGSPKRREI GHGKLAWRGI NAVMPTAEEF
PYSVRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKTSV AGIAMGLVKE GDNFVVLSDI
LGDEDHLGDM DFKVAGTRDG VTALQMDIKI EGITKEIMEI ALQQAYGARV HILNVMDQAI
GSHRDDISDH APRITTIKIN PEKIRDVIGK GGAVIRALTE ETGTTIELED DGTVKIASSN
GDATREAIRR IEEITSEVEV GRIYNGKVIR IVDFGAFVNI LPGKDGLVHI SQISDERVAN
VSDHLELNQE VTVKVMEVDR QGRVRLSIKE AQTKEAAAE
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