| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1034 |
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| Symbol | |
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| ID | 4479379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 1206822 |
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| End bp | 1208846 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639725577 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_868675 |
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| Protein GI | 117919483 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.20154 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000435621 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGAAACAA ACAAATCTCG TCGTTTTTAC AGCGCTTTTT TCGCTATCGC CATCTTCATT
GTTGAAATCG CCCTCGTCGT CTCCACCAAG CAGCAACTCA CTACCACTCA ACAGGAATTA
CTCGATTCTG TAGAACAACC CGCCGCCAAC GCCGTCTGGG CTTTAGATGA TAATTTGGCA
AGGCAAACCC TAGAGGGGGC GATTAAAGTA GAGCATGTGG GCTCTGCGGT GATTGAACTC
GATGACGGCT CGATGTTTGT TTCCGTGAGC AATAATAAGA AAAACAACTC ACAAACCTTT
ATCAGCCTCA GCAATAAACT CTTTGATGAC TTAAAAGAAA TCTCACGGCC CTTGTATCGG
CCCTTTTACT TTGAAGGCAC TCAAAAACAG CAGCTTATCG GCACGCTAAC CATTTTTTAC
GATACGCAGG AACTGACCAA CACCCTCTTT AGCCAGTTAC GCTTCAGCTT TTTTGCCACC
TTAGCCCGCG CGCTGTTACT CACCTTAGTG CTGTCTGTCG TATTCCACCG CTTCTTGACA
CAGCCAATAG CCAGGATCAG CGAGGCCATT GATAAGATTT CCCCCGATTC GCCCGATGAA
AACCTGCTGC CCATGTCCAA CGCCCATAAG GATGATGAAT TAGGTCTAGT GACATCGAAG
TTTAACCAGA TCCTTATTCA ATTCAGTCAG ACCCAATCCA AACTGCGTAA AATGGCCACC
CGAGACCCAT TAACAGGCCT TCCTAATCGA ACCCTATTAC TCGAAACCAT TGCCGTGACT
ATCCAGCGCT CACGGGTTCA TAAAAGCAGT TTTGCTTTGA TGTTTATCGA CTTAGACCGT
TTCAAAAATA TCAATGACTC CCTCGGACAC GCCCTTGGCG ATCAATTCCT CGCCCGCATC
GCCCGTATTT TGGAACGCGT GGTGGGCGAT AAAGGGTCAG TATCACGCCT AGGCGGCGAT
GAATTCGTGA TTCTAGCCGA CTCAGTTCAC TCCCCCGACC AAGCTGCCGA CTTTGTCGAT
AAGCTGTTAG TGCAGCTGAA TGTGCCGATT CAGCTGAATG AACATGCGAT TCACCCGGCG
GCATCGATTG GGATTTCCAT CTATCCAGAA GATGGCAACA GCGCCGAAGA TCTTATCCGC
CATGCCGATA TCGCCATGTA CAGCGCCAAG GCCGCAGGAT CGAATCAATG GGCCTTCTTC
AAACAACAGA TGACCGAGCG CGCGGCTGTG CGACTCCGTA CCGAAGCATC GCTACATGAT
GCCTTGAAAA ACAATGAATT TTTGCTCTAC TTTCAGCCCA AATTAGATTT ACAAACCGGT
AAGATCACCG CTTGTGAAGC CCTGATCCGT TGGCAAAAGG ATGGCCGTTT AATCAGCCCC
ATCTCCTTTA TTCCGGTGGC GGAAGAAACC GGCATTATTA TTCCGATTGG ACGTTGGGTT
ATCGAGCAAA GCTGCCGCGT GCTACGCGAC TGGCAGAAGA AATATAACTA TGCGATACCG
ATTGCTATTA ATGTCGCGTC ACAACAATTT GCCGATGCCA GCTTAGTGTC GGACATTAAG
CAAATGGCGC TGCGTTACCA AATTCAACCG GAATTGCTCG AAATTGAAAT CACCGAAACA
TCGTTGATGA ATGACATTGA GCTTGCGATC AACAAGTTAG AACAGCTCAA GTCGGCCGGA
TTTGGTATCG CCGTCGATGA CTTTGGTACC GGCTACTCTT CCCTGTCTTA CCTGCGGCAT
TTGCCGATCA CGACCATGAA AATCGACCGC TGCTTCGTAT CCGACTTACC AGGAGACAGT
GCGATTGCCT CGACCATTTT GATGTTAGGT AAACAGTTAA ATCTGACTAT CGTCGCCGAA
GGCATCGAAA ACGAGCAGCA ACTCGATTGG CTCAAGCGTA ACCAATGTCA AATAGGTCAA
GGCTTCTACT TTAGCCAGCC GTTACCACAG GCAGAGTTTG AGGCGCTGTA TATTGCCAAC
CAAACCGCAA CCATTAGCAA TATTGATGGA TTTCGTGGCG CCTAA
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| Protein sequence | METNKSRRFY SAFFAIAIFI VEIALVVSTK QQLTTTQQEL LDSVEQPAAN AVWALDDNLA
RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNNSQTF ISLSNKLFDD LKEISRPLYR
PFYFEGTQKQ QLIGTLTIFY DTQELTNTLF SQLRFSFFAT LARALLLTLV LSVVFHRFLT
QPIARISEAI DKISPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ TQSKLRKMAT
RDPLTGLPNR TLLLETIAVT IQRSRVHKSS FALMFIDLDR FKNINDSLGH ALGDQFLARI
ARILERVVGD KGSVSRLGGD EFVILADSVH SPDQAADFVD KLLVQLNVPI QLNEHAIHPA
ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV RLRTEASLHD
ALKNNEFLLY FQPKLDLQTG KITACEALIR WQKDGRLISP ISFIPVAEET GIIIPIGRWV
IEQSCRVLRD WQKKYNYAIP IAINVASQQF ADASLVSDIK QMALRYQIQP ELLEIEITET
SLMNDIELAI NKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR CFVSDLPGDS
AIASTILMLG KQLNLTIVAE GIENEQQLDW LKRNQCQIGQ GFYFSQPLPQ AEFEALYIAN
QTATISNIDG FRGA
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