| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1032 |
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| Symbol | truB |
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| ID | 4479377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1205386 |
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| End bp | 1206339 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639725575 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_868673 |
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| Protein GI | 117919481 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.358719 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000301922 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGAGAC GTTCGAAGGG CCGCTTTATC GACGGTATTG TGTTGTTGGA CAAAGCCACT
GGCATGAGTT CCAACTTTGC ATTACAACGG GTAAAGCGCT TTTTTAATGC CAATAAAGCG
GGGCACACGG GGGCGCTCGA TCCCTTGGCA ACGGGTATGC TACCTGTGTG TTTAGGCGAA
GCGACTAAGT TTTCGCAGCA TTTGCTGGAT TCGGATAAGC GTTATCTGGT TACCGCAAAA
CTGGGACAAC GCACAGATAC TAGCGACTCC GACGGTGAAG TGGTGCAGAC TCGCCCGCTC
GAATTCACTG AGGCGCAGTT AATGTCCGCC TTAGAGCATT TTCGTGGCGA TACCCAGCAA
GTACCCTCCA TGTATTCGGC GCTGAAATAC CAAGGCCAGC CTTTGTATAA GTATGCCCGC
GAGGGGATTG AAGTGCCGCG CGAGGCGCGT CCAATTACGG TCTTTGAACT GAACTTCATC
GGTCTAGAAG GCGATGAGCT GACCTTAGAC ATTCATTGTT CAAAGGGCAC TTATATTCGC
ACTATCATCG ATGATTTAGG TGAGATGCTT GGTTGTGGCG CCCATGTGAT TATGCTGCGT
CGTACTCAAG TCGCGCATTA TCCCTACGAC AAAATGGTCA CCTTGGAGCA ACTCGAAGCC
TTAGTCGCTA AGGCGCAGGA AGAGCAGCTT GACCCTAGCA GTTTGCTTGA CTCGTTGCTG
CTACCTATGG ATACCGCTGT TGCTGACTTT CCTGAGGTCA ATGTGCCAGA TGCAAGCGCA
GCTTACTTAA TGCAAGGTCA GGCGGTACGT GTCTCTGGAC TCGTTGCAGA TACATTGGTG
CGCATTACGT TGGGCACTGA GCGTCGTTTC GTTGGAATTG GCGAGATGAA CCAAGATGGC
TTACTGGCAC CAAAGCGCTT AGTTGTGCTC CACGACCAAG CTAAAGCATC TTAA
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| Protein sequence | MARRSKGRFI DGIVLLDKAT GMSSNFALQR VKRFFNANKA GHTGALDPLA TGMLPVCLGE
ATKFSQHLLD SDKRYLVTAK LGQRTDTSDS DGEVVQTRPL EFTEAQLMSA LEHFRGDTQQ
VPSMYSALKY QGQPLYKYAR EGIEVPREAR PITVFELNFI GLEGDELTLD IHCSKGTYIR
TIIDDLGEML GCGAHVIMLR RTQVAHYPYD KMVTLEQLEA LVAKAQEEQL DPSSLLDSLL
LPMDTAVADF PEVNVPDASA AYLMQGQAVR VSGLVADTLV RITLGTERRF VGIGEMNQDG
LLAPKRLVVL HDQAKAS
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