Gene Shewana3_1008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1008 
Symbol 
ID4477536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp1178510 
End bp1179934 
Gene Length1425 bp 
Protein Length474 aa 
Translation table11 
GC content49% 
IMG OID639725542 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_868649 
Protein GI117919457 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[TIGR00089] RNA modification enzyme, MiaB family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.132109 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0977371 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAAA AACTCCATAT TAAAACTTGG GGCTGTCAAA TGAATGAGTA TGACTCATCC 
AAGATGGCGG ATCTTTTAGG CGAATACCAA GGTTACACCT TGACTGAAGA AGCAGAAGAA
GCGGACATTC TACTGCTGAA CACTTGTTCT ATCCGCGAAA AAGCGCAGGA AAAAGTGTTC
CATCAGTTAG GTCGTTGGAA AACCCTTAAA GATAAAAATC CCGATCTGAT CATTGGTGTG
GGTGGTTGTG TTGCATCGCA GGAAGGTAAA GCGATCAAAG ACCGTGCTCA GTGCGTCGAC
ATCATCTTTG GACCACAGAC ACTACACCGT CTGCCAGATA TGATCGACCA AGTACGCCGT
GGCGAAAAGG CCGTGATCGA CGTTAGCTTC CCTGAAATCG AGAAATTTGA CCGTCTACCA
GAACCGCGCG CCGAAGGCCC AACGGCGTTT GTGTCTATCA TGGAAGGTTG CAGCAAGTAC
TGTTCATTCT GCGTGGTGCC TTATACCCGT GGTGAAGAAG TCAGCCGTCC ATCGGACGAT
ATCATCCTCG AGATTGCCCA ACTGGCAGAA CAAGGTGTGC GCGAAGTCAA CCTGCTCGGT
CAAAACGTTA ACGCCTACCG TGGTGCAACC CACGACGGCG GCATTTGTAC CTTTGCCGAG
CTATTACGCT ATGTTGCCGC TATCGATGGT ATCGACCGTA TTCGCTTCAC CACCAGTCAC
CCGATTGAAT TTACGCAGGA CATTATCGAC GTTTACGAAG ATACTCCTGA ATTAGTCAGC
TTCCTGCACT TACCAGTGCA ATCGGGTTCT GACCGCATTC TGACGGCAAT GAAGCGTGGC
CATATGGCGA TAGAGTACAA GTCAATCATC CGCCGTCTGC GCAAAGCCCG TCCTGATATC
CAAATCAGCT CTGACTTTAT CATTGGCTTC CCTGGCGAAA CCAAAGAAGA CTTCGCCGAT
ACCATGAAGC TGATTGAAGA TGTGGCGTTT GACCACAGCT TTAGCTTTAT CTACAGTGCG
CGCCCTGGTA CACCTGCGGC AGATTTACCC GATGACGTTG ATATGGAAGA GAAAAAACAA
CGTCTGGCGA TTCTGCAGGA CCGTATCACT CAACAAGCCA TGCGTTACAG CCGCCATATG
ATGGGCACAG TACAACGTAT TCTGGTTGAA GGCCCATCGG TGAAAAACCC TATGGAGCTG
CGCGGCCGTA CCGAAAACAA CCGTGTCGTC AACTTCGAAG GTCAGCCAAA GCACATCGGT
AGCTTTGTGG ATGTCGAAAT TGTTGACGTT TACACTAACT CACTGCGCGG TAAATTTATC
CGTGGTGAAG ATGAAATGGA TCTGCGCCGC AACCTGCGCC CATCGGATAT TCTGGCCAAA
CACAAACAGG ATGACGATCT CGGTGTGACA CAATTTAAAC CTTAA
 
Protein sequence
MSKKLHIKTW GCQMNEYDSS KMADLLGEYQ GYTLTEEAEE ADILLLNTCS IREKAQEKVF 
HQLGRWKTLK DKNPDLIIGV GGCVASQEGK AIKDRAQCVD IIFGPQTLHR LPDMIDQVRR
GEKAVIDVSF PEIEKFDRLP EPRAEGPTAF VSIMEGCSKY CSFCVVPYTR GEEVSRPSDD
IILEIAQLAE QGVREVNLLG QNVNAYRGAT HDGGICTFAE LLRYVAAIDG IDRIRFTTSH
PIEFTQDIID VYEDTPELVS FLHLPVQSGS DRILTAMKRG HMAIEYKSII RRLRKARPDI
QISSDFIIGF PGETKEDFAD TMKLIEDVAF DHSFSFIYSA RPGTPAADLP DDVDMEEKKQ
RLAILQDRIT QQAMRYSRHM MGTVQRILVE GPSVKNPMEL RGRTENNRVV NFEGQPKHIG
SFVDVEIVDV YTNSLRGKFI RGEDEMDLRR NLRPSDILAK HKQDDDLGVT QFKP