| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1004 |
|---|
| Symbol | lnt |
|---|
| ID | 4477532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 1174223 |
|---|
| End bp | 1175773 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639725538 |
|---|
| Product | apolipoprotein N-acyltransferase |
|---|
| Protein accession | YP_868645 |
|---|
| Protein GI | 117919453 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0815] Apolipoprotein N-acyltransferase |
|---|
| TIGRFAM ID | [TIGR00546] apolipoprotein N-acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.13359 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTAACTA ACATTCGGGC TTTTGCCCAA CAAAAGTCCC GACTGAGCGT GTTACGGCTC
GTGCTGGCGT TTATTTTAGG CGCCAGTACG GCGCTTTCCT TTGCCCCTTA TTCCTTGTGG
ATTATCTATC CCGTCGCCAT GGCCTTAGCC CTGTGGCTGA GTGGCTCCTT GACTCCTAAA
GCCAGCTTCT TCCATTGGTT AAGCTTTGGT TTTGGCTGTT TCGCCGTTGG GATCAGTTGG
GTGCATGTCA GTATGGACAC CTTCGGTGGC CTCCCCTTGG CCGCCTCAGT GGGGCTAATG
GCGCTGTTAG CCCTCTATTT AGCCCTTTAT CCGGCCTTAA CGGGTCTCGG TTTAGCGTGG
TTGACCCGCA CTAATACTCC GTCGCTATGG CGCAATCTAT TACTCTTCCC CTCGCTTTGG
GTCTTAGCCG AATGGGCTAG AGGCTGGGTG ATGACAGGAT TTCCCTGGAT CTGGGCCGGC
TACTCTCAAA CCCAAGGTCC ATTAAAGGAA CTCGCGAGTA TTATTGGTGC CCTAGGACTC
AGTTTCTTAA TTGCGATGCT CGCAGGCGCC TTAGCCCTGT GTTTTAGCAA GCGCTACAAA
AGCCTGTTGA TTTTACTGCC CATCATCGCA GCTGCGGCTT GGGTTGCCCC AAAGCTAACG
CAAATCCAGC CGACAGGCGA ATCAGTTAAA GTTGCTCTGG TGCAGGGAAA CATTCCCCAA
AGTATGAAAT GGGAACCCGA GGCACTCTGG CCAACCCTAT TGAAATACAT GGATTTATCC
CGTGAGCACT TCGACGCTGA CATTATCGTC TGGCCAGAAG CCGCGATCCC GGCGCCAGAA
TCTATGGTGC AAGACTTTTT GGATAATGCT AACAAGGTTG CCAACCTTAA CCACACTTCC
ATCATCACGG GGATTATTAG CCGTCAACAG AACGAGTTTT ATAACTCTTT GATCGTGCTA
GGTAACCATA ATCAGAAGCA ACAAGATACG CCGGATTATG AGAGCGATGG CAGCAACCAG
TTTAAAAAAC ACCATCTACT GCCTATCGGC GAGTTTGTGC CCTTTGAAAC CTTACTGCGC
CCAATTGCGC CTTTCTTCAA TCTGCCAATG TCCTCCTTCG CTCGGGGCGA TTATCAACAG
CCGAACTTGA GCGCCGTAGG CCATAAAATT GCCCCGGCAA TTTGTTATGA AATCGCCTTC
CCAGAGCAGC TGCGTGACAG TGTTAACCTC GGCACCGATC TGCTGTTAAC CGTATCGAAC
GATGCGTGGT TTGGCACCTC AAATGGGCCG TTGCAGCACA TGGAAATCGC CCAAATGCGC
GCCATCGAAT TGGGCCGTCC TCTGGTGCGC GCCACCAACA ACGGTGTGAC CGCGGTTGTT
GATGAGAAAG GCAATATCAC AGCTGCACTG CCGCAATTCG AAACGGGCGT GCTAAGCGCG
ACGATTCCAC TGGTCACAGG CCAAACTTGG TTTGCCAAAA TCGGCCAAAC ACCGCTGCTA
TTGCTGTGTG GTGCGCTGCT GTTCGTCGGG TTTATTCGTC GTAAAAAATA A
|
|---|
| Protein sequence | MLTNIRAFAQ QKSRLSVLRL VLAFILGAST ALSFAPYSLW IIYPVAMALA LWLSGSLTPK
ASFFHWLSFG FGCFAVGISW VHVSMDTFGG LPLAASVGLM ALLALYLALY PALTGLGLAW
LTRTNTPSLW RNLLLFPSLW VLAEWARGWV MTGFPWIWAG YSQTQGPLKE LASIIGALGL
SFLIAMLAGA LALCFSKRYK SLLILLPIIA AAAWVAPKLT QIQPTGESVK VALVQGNIPQ
SMKWEPEALW PTLLKYMDLS REHFDADIIV WPEAAIPAPE SMVQDFLDNA NKVANLNHTS
IITGIISRQQ NEFYNSLIVL GNHNQKQQDT PDYESDGSNQ FKKHHLLPIG EFVPFETLLR
PIAPFFNLPM SSFARGDYQQ PNLSAVGHKI APAICYEIAF PEQLRDSVNL GTDLLLTVSN
DAWFGTSNGP LQHMEIAQMR AIELGRPLVR ATNNGVTAVV DEKGNITAAL PQFETGVLSA
TIPLVTGQTW FAKIGQTPLL LLCGALLFVG FIRRKK
|
|---|
| |