| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0783 |
|---|
| Symbol | |
|---|
| ID | 4476994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 904676 |
|---|
| End bp | 906067 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639725319 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_868427 |
|---|
| Protein GI | 117919235 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00901] AmpG-related permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.191663 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTATGT TCGTAATCGG TTTAAATCGA CGCATCTTAG AATTCTTCAG CGTTTACTAC
CATAAGCGCG TGTTGATTCT GCTGTTACTC GGCTTTTCTG CCGGCCTGCC ATTAATGCTG
GTCTTTTCAA CTTTGTCTTT TTGGCTACGG GAAGCGGGAG TCGACCGCAC TTCTATCGGG
TATTTCAGTT GGATAGCGCT GGCTTATGCC TTCAAATGGG CTTGGTCACC CTTAGTGGAC
AGATTATCAC TGCCCATACT GACGCGCTTT TTAGGCCGTC GGCGCAGTTG GATGCTGTTC
GCCCAGCTGT TGTTAGTTGG CGCCATTTTG GGCATGTCCT TTAGCGACCC ACTCCAAGAT
CTCGAACGTT TGGCCGTATT TGCCCTCATG GTCGCCTTTG CATCCGCCAC CCAAGATATT
GTGATTGACG CCTTTCGTAT CGAATCAGCC CCCGAAAAAA TGCAGGCCGC ACTTGCCGCC
GCCTATCAGG TGGGTTATCG CAGCGCCATG ATTGTGGCGA CGGCTGGAGC CTTGAGCATC
GCCGCTTGGG TTGAGCCAGG CAATACCGAA TATAATCTGC TCGCTTGGCA AACTTCCTAT
TTGGTGATGG CAGGACTGAT GTTTGTCGGG GTGTTAACAA CGCTTTTTAG CCGCGAGCCA
CAGGTCGATA CCCGCGCCGC CGATGAGACC GAATTAGCGG TAAAACAACG CTTGAGCGAG
CGTTACCCCA AGCTGCTTGC GGCGAGCCTC TCATGGATTT ATACCGCCAG CATACTGCCC
TTTATCGACT TTTTTAAACG CTATGGTCGC AGCGCCATTT TGATTTTATT GCTGATTTCC
TGCTATCGCA TTTCGGATAT TGTGATGGGG ATTATGGCCA ACGTGTTCTA CGTGGACATG
GGATTTAGCA AAGAAGAAAT TGCTTATCTG AGTAAGATCT ACGGTCTTAT CATGACCTTA
GTTGGCGCCG CCTTCGGCGG TATCCTTTTA GCCCGCTTCG GCACCATGAA GATTTTATTC
CTTGGCGCCC TCTTGGTCGC CGTAACCAAT CTACTGTTTG CCTGGCAGGC GATGATTGGT
TACAACGTCC AATTTTTAAC CTTTGCGATC TCGGTCGATA ACTTTAGTGC CGGTATTGCC
ACCGCAGCCT TTATCGCTTA TCTCTCGAGC CTCACCAGCA GCGGCTATAG CGCGACCCAA
TATGCACTGC TCTCCTCAAT TATGTTGCTC TTCCCAAAAT TTATTGCTGG CTTCTCGGGC
GCCTATGTTG ATGCCTATGG CTATGTGAAC TTCTTTGTCG CCGCCAGTGT AATTGGTTTT
CCCGTGTTGC TGCTTATTCA TTTAGTGAAT AAATACGTAC CCCATAACAG CAAGGGCGAC
GCCGAATCCT AA
|
|---|
| Protein sequence | MLMFVIGLNR RILEFFSVYY HKRVLILLLL GFSAGLPLML VFSTLSFWLR EAGVDRTSIG
YFSWIALAYA FKWAWSPLVD RLSLPILTRF LGRRRSWMLF AQLLLVGAIL GMSFSDPLQD
LERLAVFALM VAFASATQDI VIDAFRIESA PEKMQAALAA AYQVGYRSAM IVATAGALSI
AAWVEPGNTE YNLLAWQTSY LVMAGLMFVG VLTTLFSREP QVDTRAADET ELAVKQRLSE
RYPKLLAASL SWIYTASILP FIDFFKRYGR SAILILLLIS CYRISDIVMG IMANVFYVDM
GFSKEEIAYL SKIYGLIMTL VGAAFGGILL ARFGTMKILF LGALLVAVTN LLFAWQAMIG
YNVQFLTFAI SVDNFSAGIA TAAFIAYLSS LTSSGYSATQ YALLSSIMLL FPKFIAGFSG
AYVDAYGYVN FFVAASVIGF PVLLLIHLVN KYVPHNSKGD AES
|
|---|
| |