| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0725 |
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| Symbol | tolC |
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| ID | 4476935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 841529 |
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| End bp | 842836 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 639725260 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_868369 |
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| Protein GI | 117919177 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000245313 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000963429 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTTA AGATCCGTTC TCTATGCGCA GCATTAACTC TCGCGGCTTC CGCTCAAGCG
GTTCAAGCAG ATGATTTACT GCAAATATAT CAACAAGCAC TGACGAGCGA CCCGCTAGTA
TTACAAGCAC AAGCTCAGCG TAATGCCTTG TTTGAAAAGA TCGAACAAAA CCGTGCACCA
CTGTTACCGA CCATCAGCGC TAACGTGGGT TATGACAAAG CATGGAATGA TCCTAAGAGC
GATACCAGTG GATTGACCGG TAGCCTAAAA CTGAACCAAG TGATCTATGA TCACAGCGCT
TGGGTTGGTT TAAGCCTTGC CGAAAAAGCC GCTTCTCAAG CCGATTCGAC CTATGCATCA
GCACTGCAAA ATTTGATCAC TCGTGTGACT AAAGCCTACT TCGATGTATT AACGGCAAAA
GATAACTACG AGTTCCAAGG CGCAGAAAAA CGTGCGATTG AGCGTCAACT CGAGCAGACA
AAACAACGTT TTGCCGTAGG TTTAACTGCG ATTACCGACG TACATGAAGC GCAAGCTCAG
TATGACTTAG CCTCGGCGAC TGAAATTTTG GCTGAAAACA CACTAGCCAA CAGCTACGAA
GCCCTGCGTG AAATCACAGG TATCGATCAC AAGACCATTA ATGTGCTCGA CACCAACCGT
TTCTCTGCGG TAACGCCAGC ACCTACCTCA TCGAGTGAGT GGCTAAAGAT TGCTGAAACC
AATAGCGTCG ATCTGATGAC TCAACGCATC GGTAAAGATA TCGCTCAAGA GACCATTAGC
CTCTACAAAG CGGGCCATAT GCCATCTCTT AGCCTAAACG CTGGCTATAA CAAAGGGTTA
GAGCAAAAAA CGGGCGACGT AAATGAGCCA GATTTTGACA ATGTGAACGT TGGTGTGAAC
TTAAGCATTC CTATTTTCGA AGGCTTTAAA GTCACGTCAC AGGTCAAAGA AGCACAATTC
CAATATGTGG AAGCGAGCGA GAAGTTAGAG CAAACCTACC GTAGTGTGGT GAAAAACGTT
CGTAACAACT ACAACAACGT AGGCGCTTCA ATCAGCTCTA TCCGTGCCTA TGAGCAGTCA
GTGATTTCAT CTGAAAGTGC GTTAAAGGCA ACACAAGCGG GTTTTGAAGT CGGTACTCGT
ACTATTGTTG ACGTACTGAA CCGTACCCGT GACCTGTACG ACTCAAAACG TAAATTGTCG
GATGCTCGTT ACAGCTACAT CAACTCAATT ATTGCGTTGA AACAAGCTGC AGGCACCTTA
AATGAAGACG ATGTTATCTC TATCAACAAC GGTCTAAAAG CCGAATAA
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| Protein sequence | MKFKIRSLCA ALTLAASAQA VQADDLLQIY QQALTSDPLV LQAQAQRNAL FEKIEQNRAP
LLPTISANVG YDKAWNDPKS DTSGLTGSLK LNQVIYDHSA WVGLSLAEKA ASQADSTYAS
ALQNLITRVT KAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASATEIL AENTLANSYE ALREITGIDH KTINVLDTNR FSAVTPAPTS SSEWLKIAET
NSVDLMTQRI GKDIAQETIS LYKAGHMPSL SLNAGYNKGL EQKTGDVNEP DFDNVNVGVN
LSIPIFEGFK VTSQVKEAQF QYVEASEKLE QTYRSVVKNV RNNYNNVGAS ISSIRAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSI IALKQAAGTL
NEDDVISINN GLKAE
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