| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0697 |
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| Symbol | |
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| ID | 4476907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 812472 |
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| End bp | 814901 |
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| Gene Length | 2430 bp |
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| Protein Length | 809 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639725232 |
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| Product | RNAse R |
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| Protein accession | YP_868341 |
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| Protein GI | 117919149 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00112836 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000328486 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAAAG ACCCTCATTT CGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGT
CGTGAGTATA TTATCGAGTA CTTACGTTCT CAAAAATCAC CTATTACCCG TGACAGCATC
GCTGTTGCAC TGCAGATCCA TGATGAAGAA CAGTTAGAAG CCCTGCGTCG CCGTTTACGG
GCGATGGAGC GCGATGGTGA ACTGGTATTT ACCCGCGGTC AAAGCTACGG CTTACCTGAA
AAAATGGATC TGATTTCCGG CACTGTCCTT GGGCACAGAG AAGGCTACGG CTTCTTTAAA
CCTGACGAAG GTGGCGACGA TTTATTTATC TCAAATCGCG ACATGCTGAT GTATTTCCAT
GGCGATAAAG TACTGGCACA AAAAGCTGGT ATGGACCGTA AAGGCCGCCG CGAGGCCCGT
ATCGTCCGTC TGATCCAACC GCGCAGTGCC GCCATTGTGG GGCGATTCCA TGTCGATAGC
GGCATGGCAT TTGTGATTGC CGATGATAAG CGCATTACCC AAGAAATCTT AATCGCTACC
GAAGATCGCA ATGGCGCCCG TCAAGGCGAT GTGGTCGTGG TTGAACTGAC CCGTCGTCCG
GGTCGATTCG TTAAAGCGGC TGGTAAAGTC ACTGAGGTGC TCGGCAAACA AATGGCGCCA
GGAATGGAAA TCGAAATTGC CCTGCGTAAT TACGATTTAC CCCACACTTG GTCGGCTGTG
ATTGAGAAAA AACTGCGCCG GATCCCTGAT GAAGTGACTG AAGCCGATAA GGTTGGCCGC
GTCGATCTGC GAGACCTGCC CTTAGTGACT ATCGATGGCG AAGATGCCCG CGACTTTGAC
GATGCAGTAT ACGCCGAAGT CAAACCCAGT GGTGGATGGC GTCTATGGGT GGCGATTGCG
GATGTGAGCT ACTACGTGCG TACCGATTCG GCCTTAGATA CCGAAGCCCG TGCCCGTGGT
AACTCGGTAT ACTTCCCATC GCAAGTGATC CCTATGCTGC CGGAGAAAAT CTCTAACGGC
CTGTGCTCGC TCAATCCCCA TGTCGACCGC CTGTGTATGG TCGCTGAGAT GACGATTTCG
GCACGCGGTA AGCTGTCGGG TTATAAGTTT TATCCCGCAG TGATGCATTC ACATGCGCGT
TTCACTTACA CCCAAGTAGC TGCCATGCTC GAAGGCGGAC CGATTGCGCC TGAGCATGAA
GCGCTATTCC CGCATCTGCA ATGTTTGCAG TCGCTTTATT TGGCGCTCGA TGAACAGCGC
GCCGAGCGTG GGGCGATTGC CTTTGAGACC CTAGAAACGC AGTTTATTTT TAACGACCAG
CGCAAGATCG ATAAGATTGT GCCAAGAGCG CGTAATCAAG CTCATAAAAT CATTGAAGAA
TGTATGATTT TGGCCAACGT ATCGGCCGCT AAGTTTGTGA AAAAGCACAA GGGTGAAATC
CTCTATCGCG TGCATGAATC GCCCTCTGAG CAGAAGCTCG CAAACTTTAA AGAGTTTCTG
GCCGAACGAG GTTTAAGCAT GGGCGGCGGA CTCGAGCCAA CACCTGCGGA TTACCAGAAT
GTGATGCTGC AAATCGCCGA TAGGCCCGAT GCCGAGCTTA TCCAAGTGAT GTTACTGCGC
TCAATGCGCC AAGCTATCTA CACACCTGAT AACGAAGGCC ACTTTGGTTT AGCACTCGAA
GAATATGCGC ACTTCACTTC GCCAATTCGT CGTTATCCTG ACTTAGTGCT TCACCGCGTG
ATCCGCTATT TATTGGCGAA GGAAAAAGGT GAAGCCAATG AGAAGTGGAC ATCCGATGGT
GGCTACCATT ATCAACTCGA TGAGTTAGAC CTTTTAGGCG AAGAATGTTC GAACACCGAG
CGCCGTGCCG ATGAAGCGAC CCGTGATGTA AGCGACTGGT TGAAATGTGA ATTTATGCAG
GACCATGTAG GTGACACCTT CGAGGCGGTT ATTGCCTCTG TCACTAACTT TGGTTTATTC
GTTCGCTTAA ATGACTTATT TATCGATGGC TTAGTACATA TTTCTAGTTT GGGCAGCGAT
TATTATCAGT TCGACCCTAT GCGTCAGCGT TTGATTGGCG AGCATACAGG TCAAATCTAT
CAAGTGGGTG ACCCCGTCAC GGTAAAAGTG GCTGCGGTAA ACTTGGATGA TAGACAGATT
GACTTAGTCA TGCTTGGCGA TAGCGGAAAA GGCGGTCGCC GTAAGTCTGC GCCGAGTCGA
GAAAAACCGA TGACAGCGCG TGAGCGGGTA AACCGTGAAG GCGCAAAAAT GGCTAAGGCA
GCTAAATCGA CAGGTGCGAA ATCGAAAGCC GGTTCAGATA AAGCTGGGGC GAGTAAGTCC
AAGTCTAAAG CAGGCGCTAA ACCTAAGAAA AGCGTAAAAA ATTCGGCGAA AAAGCCAAAG
GCCGCGAAGC GGAGCACGAG AAAGAAGTAA
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| Protein sequence | MIKDPHFERE QDKYENPIPS REYIIEYLRS QKSPITRDSI AVALQIHDEE QLEALRRRLR
AMERDGELVF TRGQSYGLPE KMDLISGTVL GHREGYGFFK PDEGGDDLFI SNRDMLMYFH
GDKVLAQKAG MDRKGRREAR IVRLIQPRSA AIVGRFHVDS GMAFVIADDK RITQEILIAT
EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSAV
IEKKLRRIPD EVTEADKVGR VDLRDLPLVT IDGEDARDFD DAVYAEVKPS GGWRLWVAIA
DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPHVDR LCMVAEMTIS
ARGKLSGYKF YPAVMHSHAR FTYTQVAAML EGGPIAPEHE ALFPHLQCLQ SLYLALDEQR
AERGAIAFET LETQFIFNDQ RKIDKIVPRA RNQAHKIIEE CMILANVSAA KFVKKHKGEI
LYRVHESPSE QKLANFKEFL AERGLSMGGG LEPTPADYQN VMLQIADRPD AELIQVMLLR
SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKEKG EANEKWTSDG
GYHYQLDELD LLGEECSNTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTNFGLF
VRLNDLFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQIY QVGDPVTVKV AAVNLDDRQI
DLVMLGDSGK GGRRKSAPSR EKPMTARERV NREGAKMAKA AKSTGAKSKA GSDKAGASKS
KSKAGAKPKK SVKNSAKKPK AAKRSTRKK
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