Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0659 |
Symbol | |
ID | 4476869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 779893 |
End bp | 781833 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639725194 |
Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
Protein accession | YP_868303 |
Protein GI | 117919111 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.172911 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTACA AGTTTGCCCT CCAACAATCT CAAAAAGAAC GTTTATTCGC GGATATCGCT ATTGATACAG GCAAGATTAC CGTGCCGCCT GAGATGCTAG AGAATTGGCA ACAAACCTTA GATCTGCTCT CCGAGATAGT GGATACGCCG GCCGCGCTTA TCATGCGTGT TCATCCTACC GAGATTGAAG TATTTGCCTC GAGCCATAGT CAGGGAAATC CCTACAAGCC CCACGATAAA GAGCATTTAG GCCATGGCCT GTATTGCGAA ACCGTGATGA AAGAATGTCG AGAGCTCCAC ATCCCCAACG CTTTGAAGGA TGCCGATTGG GATAAAAATC CCGACATAAA ACTGGGGATG ATAGCCTACT GCGGCCTGCC CTTGCATTGG CCCGATAACA GCACCTTCGG CACCATTTGT ATGCTCGACA GTAAGGAGCG TAACTACAGC CAGCAGTTCC GCAGTTTATT GGCACGATTT CAAAATGCTA TCGAAACCAA TCTGATCACT CTGTTCCAAC AGGCTAAGTT GCAGCTCCAT AACCAACAAC TCGAACAGAA AGTGCAGCAA CGCACCCATG AACTGGCAGA ACTCAGCGCC AAGTTAATCC GTGAAATTGA AACCCGTACG ACGACCGAAA GCTCACTTGA GTATCATAAA AGCTACGATC CGCTGACAGG GTTACCCAAC CGGCTCAATC TCATCAACAC CCTAGCGAAT ATGCTGGAAG AGATTAATCG TAAAGAAAAA ATATCAGTGT TTTACCTAGG GCTGCGTAAC TTTAAATCCA TTAACGACAG CTACGGTTAT CTTATCGGCG ATAAGATACT CACCATCTTG AGCCAACGCT TACAACATTG CACAGACGGT CATACCTTTA TTGCCCGCAT CGCGGGGGCG GAGTTTGTGC TAGTGCAAGC CCATAAGCCC TCACAGCGTG AGACTCACAA ACTGCTGAAT CAGATCATCA ACTGCTGCAA TTCCCCCTTT GGTATCGCAG ACTTCGTGAT CACTATTCCC TCGTCAATCG GCATAGCACA GGCGCCAAGC GACGGTATCG ATGCCGCAAC CCTGCTGCAA AAAGCCGGAG CTGCCATGAC CATCAGCAAG GCCGAAGGCA TTCCCTACAG CTTTTTCAAT CAAGACACCC AAATCGCACT GAGCCAGCGC TATCAACTCG AGTCGCACTT AGTCGATGCC CTGAGAAACA ATGAATTAAG CTTGCACTAC CAACCCTTTA TCGAACTCAA GACTCACAAA GTGATTGGCG CAGAAGCGCT GCTGCGTTGG CACAATCCCG TGCTAGGACA AGTTACCCCC GACCGATTTA TCGCCTTGGC CGAACGTAAT GGGCAAATCA TGGAGATAGG TAACTTTGTG CTCCACAGCG CCATTAAACA AGCCGCCGAC TGGTGCCGAA TACTGCAGCG GGACTTTAAA ATCGCCATCA ATATCTCCCC CGTACAAATG CGTAATCCCC GCTTTGCCGA ACATATTGCC GAGCTACTAA CCCTGTACCA ATTACCTGCC ACGGCACTGG AGCTCGAGAT CACCGAAGGA ATGCTATTGC AGGACGAGCA CTTAGCCCAT AACGCTATTC AGCAATTGCA GGAACTGGGG ATCCGCATCT CACTCGATGA TTTTGGCACC GGCTACTCTT CCCTAAGCTA TCTGCAAAAG TATTCCTTCG ATACCTTAAA AATCGACCGC TGCTTTATCA GTAAGCTCGA AAACAGCGAG CAGGACAGGG AGTTAACTAA GGCCATTATC GCCATAGGTA AAAAGCTCAA ACTGAAGGTG ATTGCCGAGG GAGTTGAAAA CACCCATCAG GACAGTTTTA TCCGCAGTGA AGAATGCGAT TTAGGCCAAG GCTACCTCTA TGGTAAACCC ATGACGCCAG CGCAGTTTGA GCGGGAGTTC ATCCGCAAGC CAGAGGCTTA A
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Protein sequence | MPYKFALQQS QKERLFADIA IDTGKITVPP EMLENWQQTL DLLSEIVDTP AALIMRVHPT EIEVFASSHS QGNPYKPHDK EHLGHGLYCE TVMKECRELH IPNALKDADW DKNPDIKLGM IAYCGLPLHW PDNSTFGTIC MLDSKERNYS QQFRSLLARF QNAIETNLIT LFQQAKLQLH NQQLEQKVQQ RTHELAELSA KLIREIETRT TTESSLEYHK SYDPLTGLPN RLNLINTLAN MLEEINRKEK ISVFYLGLRN FKSINDSYGY LIGDKILTIL SQRLQHCTDG HTFIARIAGA EFVLVQAHKP SQRETHKLLN QIINCCNSPF GIADFVITIP SSIGIAQAPS DGIDAATLLQ KAGAAMTISK AEGIPYSFFN QDTQIALSQR YQLESHLVDA LRNNELSLHY QPFIELKTHK VIGAEALLRW HNPVLGQVTP DRFIALAERN GQIMEIGNFV LHSAIKQAAD WCRILQRDFK IAINISPVQM RNPRFAEHIA ELLTLYQLPA TALELEITEG MLLQDEHLAH NAIQQLQELG IRISLDDFGT GYSSLSYLQK YSFDTLKIDR CFISKLENSE QDRELTKAII AIGKKLKLKV IAEGVENTHQ DSFIRSEECD LGQGYLYGKP MTPAQFEREF IRKPEA
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