| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0601 |
|---|
| Symbol | |
|---|
| ID | 4476636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 704923 |
|---|
| End bp | 705513 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639725137 |
|---|
| Product | ubiquinol-cytochrome c reductase, iron-sulfur subunit |
|---|
| Protein accession | YP_868246 |
|---|
| Protein GI | 117919054 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0723] Rieske Fe-S protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01416] ubiquinol-cytochrome c reductase, iron-sulfur subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000117425 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000553459 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATG CGCCAGTCGA TACCGGACGT CGCAGATTCC TGACAGCCGC AACCGCCGTA
GTAGGTGGTG CTGGTGCCGT CGCTGTAGCG GTTCCTTTCA TCAAGTCATG GAATCCGAGT
GCCAAGGCGA AAGCTGCAGG TGCGCCGGTA GAAGTAAATA TCAGTAAAAT TGAGCCAGGT
CAGCTGATCC GTGTTGAATG GCGTGGTAAA CCTGTATGGG TTGTCCGTCG CACAGAAGCA
GTGATTAATG AACTGCCAAC ACACGACGAT AAGCTAAGAG ATCCAGCGTC TGCAGAAATG
CAACAACCTG AATATGCAAC AAATCCTCTG CGTTCTATTA AGCCAGAGTA TTTTATTGCC
GTCGGTATTT GTACCCACCT AGGATGTTCA CCAACTTATT TACCAGATTC ATTTGGTGAG
CAAGTTCAAG GCGTGACTTC TGGTTTCTTC TGTCCATGTC ATGGTTCTAA GTTCGATATG
GCGGGCCGCG TATTCCAAGG CGTTCCAGCT CCATTGAACC TAGTTATCCC TCCACATCAA
TACGTTGATG ATGGCACCGT TATCATCGGT GTAGATAAAG GAGTGGCGTA A
|
|---|
| Protein sequence | MSNAPVDTGR RRFLTAATAV VGGAGAVAVA VPFIKSWNPS AKAKAAGAPV EVNISKIEPG
QLIRVEWRGK PVWVVRRTEA VINELPTHDD KLRDPASAEM QQPEYATNPL RSIKPEYFIA
VGICTHLGCS PTYLPDSFGE QVQGVTSGFF CPCHGSKFDM AGRVFQGVPA PLNLVIPPHQ
YVDDGTVIIG VDKGVA
|
|---|
| |