Gene Shewana3_0523 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0523 
Symbol 
ID4479714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp613958 
End bp615565 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content52% 
IMG OID639725056 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_868169 
Protein GI117918977 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACAA TTGCTGCGGC ACCTGAGGCT ATAGTCGCGG GGGCTATACC GAGCGAATAT 
GAGCGCGGTA GTCGCCGTTC GTGGATTGCC GTTTTCGGTG GTTTGATTGG CGCCTTTATG
GCGATCCTCG ATATTCAAAT CACCAATGCC TCGATGAAGG AAATCCAAGG CAGCCTCGGC
GCAACACTGG AGGAAGGCAG TTGGATTTCA ACGGCTTATC TGGTTGCCGA GATGATTGCG
ATTCCGCTCT CGGGCTGGTT AAGCACAGGG CTTTCGGTCA GACGTTATCT GCTGTGGACC
ACTGCTGCCT TTATCTTTGC CTCTATCCTG TGTTCGATTT CGTGGAACCT TGAGGCTATG
ATAGCCTTTC GGGCGTTGCA GGGCTTCTTT GGTGGCGCGC TGATCCCGCT GGCGTTTCGG
TTGATCTTAG AATTTTTACC CGAGAATAAA CGTGCAGTGG GGATGGCGTT ATTCGGGGTG
ACGGCGACGT TTGCGCCCTC GATTGGCCCA ACCTTAGGTG GTTGGTTAAC TGAGCATTTT
AGTTGGCATT ACCTGTTTTA TATCAACGTG CCGCCCGGAT TGCTGGTGAT GGCGATGCTG
GCCTATGGCC TCGAAAAGCG CCCTGTGGTG TGGGACAAAC TGAAAAATGC CGACTTAGCG
GGCATTGTCA CTATGGCGCT GGGCATGGGC TGTCTCGAAG TTGTGCTTGA GGAAGGCAAC
CGCAAGGATT GGTTTGGCTC GGATTTGATC CGCAATCTCG CCATTATTGC CGCAGTGAAT
TTAGTGCTGT TTGTGTGGAT CCAGCTTAAG CGCAAAGACC CTTTAGTGAA TTTACGCCTG
CTCGGTAAAC GCGATTTTGT GCTTTCGACC ATAGCTTACT TTTTACTGGG AATGGCACTC
TTTGGCGCTA TCTATTTGAT CCCACTTTAT TTATCCCAAG TGCATGATTA CACTCCGCTG
GAAATCGGTG AAGTCATTAT GTGGATGGGC TTCCCGCAGC TGTTGGTATT GCCATTAGTG
CCACGTTTAA TGCAACGTTT CGACGGGCGT TATTTAGCCG CCTTCGGCTT TTTTATGTTT
GCCCTCAGTT ATTACATGAA TAGCCAAATG ACCGCCGATT ACGCCGGGCC GCAGATGATC
GCCTCCCAAG TGGTGCGCGC CTTAGGCCAG CCCTTTATCT TAGTGCCCAT TGGTATGTTA
GCAACGGCCC ATTTAAAGCC CCATGAGAAT CCTTCGGCTT CGACCGTGCT GAACGTGATG
CGTAACTTAG GCGGCGCCTT TGGTATCGCG CTGGTGGCGA CCTTAACCGA TAACTTGGCC
CGTAGTCATT TGGCCCATGT GAAGGAGTCT CTGCCTGCGG TCAGCACACA GGCGCAGGAT
TATTTGAATC AGAGCGCCAG TATGTTGCAA CAGGGCGGCT CGGATCCCTA TACCGCCTCC
ATGCAGGCCA AGGTGCTATT AGGGCAAACC ATGAGTCAGC AGGCCTATAT TCAAGCCTAT
AACGATGTGT TTTTGATTAT GGGTGCCATG TTATTAATTG CCGTGGTGGC TGTGCTGCTT
ATCCGTAAAC CTCAAGGGCC AGTCGCCCAC GATGCGGTGA TCGAATAA
 
Protein sequence
MSTIAAAPEA IVAGAIPSEY ERGSRRSWIA VFGGLIGAFM AILDIQITNA SMKEIQGSLG 
ATLEEGSWIS TAYLVAEMIA IPLSGWLSTG LSVRRYLLWT TAAFIFASIL CSISWNLEAM
IAFRALQGFF GGALIPLAFR LILEFLPENK RAVGMALFGV TATFAPSIGP TLGGWLTEHF
SWHYLFYINV PPGLLVMAML AYGLEKRPVV WDKLKNADLA GIVTMALGMG CLEVVLEEGN
RKDWFGSDLI RNLAIIAAVN LVLFVWIQLK RKDPLVNLRL LGKRDFVLST IAYFLLGMAL
FGAIYLIPLY LSQVHDYTPL EIGEVIMWMG FPQLLVLPLV PRLMQRFDGR YLAAFGFFMF
ALSYYMNSQM TADYAGPQMI ASQVVRALGQ PFILVPIGML ATAHLKPHEN PSASTVLNVM
RNLGGAFGIA LVATLTDNLA RSHLAHVKES LPAVSTQAQD YLNQSASMLQ QGGSDPYTAS
MQAKVLLGQT MSQQAYIQAY NDVFLIMGAM LLIAVVAVLL IRKPQGPVAH DAVIE