| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0520 |
|---|
| Symbol | mscL |
|---|
| ID | 4479711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 611243 |
|---|
| End bp | 611653 |
|---|
| Gene Length | 411 bp |
|---|
| Protein Length | 136 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639725053 |
|---|
| Product | large-conductance mechanosensitive channel |
|---|
| Protein accession | YP_868166 |
|---|
| Protein GI | 117918974 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1970] Large-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | [TIGR00220] large conductance mechanosensitive channel protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAA TTAAAGAGTT CAAGGCTTTT GCGTCCCGTG GCAATGTGAT CGATATGGCG
GTGGGTATTA TCATCGGTGC CGCTTTTGGC AAGATAGTCT CATCCTTTGT AGCCGATATC
ATTATGCCGC CAATTGGGAT CATCTTAGGG GGCGTGAATT TCAGCGATCT GAGCATAGTG
TTGCAAGCCG CCCAGGGCGA TGCGCCAGCG GTAGTGATTG CTTACGGTAA ATTCATTCAA
ACCATCATCG ACTTTACCAT TATCGCCTTC GCGATTTTTA TGGGCTTAAA AGCCATTAAC
AGCCTAAAAC GCAAACAGGA AGAAGCGCCG AAAGCCCCAC CAGCGCCGAC CAAAGATCAA
GAGCTGTTAT CTGAGATCCG CGATCTGCTT AAAGCGCAGC AAGAAAAGTA A
|
|---|
| Protein sequence | MSLIKEFKAF ASRGNVIDMA VGIIIGAAFG KIVSSFVADI IMPPIGIILG GVNFSDLSIV
LQAAQGDAPA VVIAYGKFIQ TIIDFTIIAF AIFMGLKAIN SLKRKQEEAP KAPPAPTKDQ
ELLSEIRDLL KAQQEK
|
|---|
| |