| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0480 |
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| Symbol | |
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| ID | 4476709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 557774 |
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| End bp | 562834 |
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| Gene Length | 5061 bp |
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| Protein Length | 1686 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639725014 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_868127 |
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| Protein GI | 117918935 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGTTT TTGGCATTCT TTCGGGTCGT TTAGATAAGG CCATTCGACA CATCTTTACG
ACCATTGGCG GCCAGCGTCA AAGCGTAAAA CCTAGCGTGC GTGTTATCTC CTCGCTGGGG
TATTTTGCCT GTCTCTTGAG TCTGTCGGCG TCTTTACTGT GGTTATGGCC GAATACGATT
GCGGCCAATG AGATGTCACT GCAAGAACAT CGTCAGGCTT TATCCCAATT GACGCCGGCG
CAAAAACTCG CCCATAGCCA TAGGGTGAGT ATGATTTTGG AGGCGGATAG ACCCTTTTGG
AATCAAGTCG CTAAGTTTGC CAAGATTGCG GCCATGGATC TTAATATCCA GCTCGACATC
GTCTACGGCG ATGGCACGCC GGAAACCTTA CTCGCTCTGG GACATGAGGC GATAGATAAC
GCCGTTGCTG GGATTATTTT TGTCCCTATC TTAGGTATGG GACAGGACCT CTTAGTGGAG
GCCAAACGCA ACAATATCCC CGTCGTGACC ATTAACTCCG AATTTGCCCA AAGCTCATTG
GCCTTAAGAA CCCAAAATCC TAACTGGGTT GGTAAGGTGA CGATGAATAG CAGTAATCTG
GGGCAAAATC TGCTCGAAAA AATGTTTGAG GAGGAAGCCA GCTCCGAGCA GATGAACCTG
TTGCTACTCG CGGGAAGTAA GGACAATCTC GATGTGCAAA AGCGTACCGC TGAACTCAAA
AATGCCGTGA GCAGGCAATT TGCCAATGCC AAATTCAAGG TCGTTAATAC CGATTGGAGC
GCCTCGGCGG CGCGTGCCGC TTACCTTAAG GCGATACAGC AAGATCCTAA TATTAATACC
GTGATTGCAA TGAACACCAC TATGGCCATG GCGGTGACCC ATGAGGCCGA AGCCGATACT
TCGCGCCCTA TGCCCCATAT TGGTTCGCTA AGTTGGAATC ATCAATTGGC ACAAGGGATC
CAAAAGGGCA CTGTCGCTGC GGGTGTCGGC GGGGTGGAGT TTCAAGGCGC CTTTGGCCTT
GTGTTGCTAT TTGATTATTT AAACGGGGTG GATACTCGCG CTAAGGGCTT CGAGTTTCAG
GTGTTGCCTT TGATCATCAG CCCCAATAAC TATAACGATT ACTATGAGTT ACTCGATTTT
GACTCACTGC AACCTGACTT TTCTCGGGTG TCTCTTGCGC TAAATACGAA TCTGTTTTTG
GTGGATTTTC GCTTAGGCAG CTTGATCCCT AATATGGATG TTCACCGCTT TATGACTCAG
CTAAGCGTGG AGGAAAGGGC CTTTATCAAC AACAATCCTA TCGTCAAGGT TGGGATTGAT
CCTCATTCCG CTCCCATTGA TTTTATTGAT GAAAACGGCA TCCACCGTGG CATGATGGCG
GATTATCTCG CCGAGATCAG CCGCGTCGTA CCGCTGATCT TCCAGACCTA TAACGAAGGT
TCTTGGCAGC AAGCCATCGA TGAATTTAAG CGGCACGATG TGGATATGTT ATCGCTGGCC
TCGGCCAATG CTGGCCGTGA ACAATGGATG TTATTTACCG ATGCCATCAA TCAATATCCG
CCTGTGATAG TCACCCATGT CGATGGAGAA CATCCCAGCA GTTTAGAGCA GCTTAAGGGC
AAGTCAGTCA GTGTGGTTTC GGGCGATGTG ACACAAACGC AACTGCTTGA AGATTATCCT
GAAATCGTCC TTATCCCCTT TGAAAATCTT GAGCAAGCGT TAATGGCGGT GAAGCAACAC
CAAGTCGATG CTGCCTTTGT GAATTTCCCG AGCACAGCTT ACTTATTGCA ATCGCCACAG
TTTAATCGAC TGCAAATTGT GTCTGCCAGT GACTACCGCT TTGGTATCTC TATGGGGGTG
CGTAAGGATT GGCCTGAGCT ACAGAGCATT TTAAATAAGG CTCTGGCTCA AATCCCCCAG
GATAAAGTAC GTGAAATTCA GCACCGCTGG GTAAACGTGC AATATGAACT GGGACTCAAG
AAGCAGCAAG TATTTGACTG GGCGGTGCGA ATTGCCGTGG CCGTCGTGCT TGTTCTGCTG
ATGTTTAGCT TGCGAAACAG AAGGTTAAAT AAAGATATCG CACAGCGGAT CCACACCGAG
GAGCAGCTCA GCCTGAGTAT GAATAAATTC CAAGCCTTAT TCGACTCGGC GGTCGACGCC
TGTGTGATTA CCGATAGGCA AGGGGTGATT ATTGAATGTA ACTCAGCCCT GTTATCACTA
CTTAAATATC AGCATAAACA TCAGCTTATT GGTCGTCGCA CTCTAGTTTA TTATCCACCG
CACTTGGGCG AAACCGACAG CGAGACCCTG TTCGAGCAAC GTCTACAGAC TGTGCTGGAG
CAGGGGCAGT TGCGATTCGA AGCCGATTTT GTGACCTCAA TGGCGGAAAT TGTCAATGTT
GAGGTCACGC TTAAGCGCAT CGAGCTCAAT GGCTCGCTGT TTGTATTGGG CACCTATCAC
GATCTGTCGG AACGAAAGCT GATGAATGCC TTGCTTGAAC GCGAGCGGGA TCTGCTCAAA
CACGTGTTAG GTAGAAGCCC GATTGGCGTT TGGATCTGTA TCGAAGGCGT CTGCCGCTAT
GTGAACGAGC AAATTACCGA GATGACAGGG TTACAAGTGG GCCAATCCGT TTACCCGATT
TTTGCGCAGC CCGATGACTA CCGTTGCCAT ATTAGTGAAT TGGATTTAAG TCAAGACAGT
ACCGTCTTTG AAACTCAACT ATTTGATTGC AAAGGGCAGC GCCGTGATGT GTTGTTAACG
GCGTACCACA CAGTGCAGGA TGGCCAGAAT GCTAACCTCT GCTGGGCCTT GGATATTACC
GACACTAAGT CGATTCAGGA TGAGCTGGCC ATCGCTAAGG ACGCCGCCGA GGCGGCAAAC
CGTGCTAAGT CTGACTTTTT AGCGAATATG TCCCATGAGA TCCGCACGCC GATGAATGCG
ATCCTCGGTA TGTCGTATTT GGTGTTGCAG ACAGAGTTAA GCAGTAAACA GCGGGATTAT
GTGGGCAAAG TGCATCAGGC GGCGGGCTCG CTGCTGGGTA TTCTCAACGA TATTTTGGAT
TTTTCCAAAA TTGAGGCCGA GAAGATGGAT ATCGAATGCG CTGTGTTCGA TCTCGATGAT
GTGCTGTCTA ATTTGGCCAA TGTGGTGAGT TATAAGGTCG AAGAGAAGAA CATGGCGTTT
ATCTTCGATC TGCCGCCCGA ATTGCCCCGC TACTACCATG GTGATGGCCT GCGCTTGGGG
CAGATCCTGA TCAACTACTG CAATAATGCG GTCAAATTCT CCCATAACGA CAGCAATGTG
GTATTGAGCT GCGAGAGTAA AGTGCATGGT GAGCAGGTTG AGCTGACCTT CTGTGTGGAA
GATTTTGGCA TTGGTATTCC GGAGCAAAAA CAAGGGGTTC TTTTTGGCTC CTTCGAGCAG
GTGGATGCCT CTACTTCTCG GGAATATGGC GGCACAGGCT TAGGTTTAGC TATCTGTAAG
CGCCTCGCTC ATCTGATGGG CGGCGAGGTC TGGTGTGAGA GCGAATTAGG CGTCGGCAGT
CGTTTTTATG TCAGACTCAC TCTCGATTGT GCCGATACCT ACGATCCTAA TGCTTTGTTT
GATCCCTTAG CGGGAGAAAC CGCTAAGCTG ATCGGTTTAC ACCCTAGGTT AGATAAACTG
CTGACCATAC ATGGTGTTTC GGCAAACATG CAGGTCGAGA GTGCCGATGT GGGTACAGTG
ATCGCCCAAC TTAAACAGTC GTCCACAAGG CAATTGCTGA TCTGCGATTA CAGTGCATTT
GTGCCTGAAT TATTGGAAGC ATTGGCGGTT AATCAAGCAT CGCGAATGTT ACTGATTGGT
CAGCTAAGCG ATCAGGACTC TCTTAGACAA CTCATTGAAA ATAATGACAG AGTCATATCG
CAGACTAAAC CGCTTACGCC GATTGCCATA GGTAATGCGC TGTTATCCCT GCTGGGACAT
CAGAGTGAGG ATGGCAGGCA AGTACAGCAG GATCATTCGC TGCATGCCCT TAAGACCCAA
CTGGCGGGCG CAGAGGTGTT GTTAGTGGAG GATAACCAGC TCAATCAAGA GTTGGCGGTG
GAGCTATTAC GTCAGGCGGG CATCAATGTC ACTGTGGCAA ATCATGGGCT TGAGGCCATT
GAGAGAGTTG AGCAGCAGTA CTTCGATTGC GTATTAATGG ATTGCCAGAT GCCTGTGCTC
GATGGTTACG AGGCGACGCG TCGCATCCGC GAATTGCCCC AATTTGCCAA CTTACCGATC
TTGGCGATGA CGGCCAATGC CATGTCCGGC GATATTGAAA AGGCACTGGC GGTGGGGATG
AATGATCAGA TCACTAAGCC TGTGCATGTG AAGGATCTCT ACACTGTGAT GGCGCGCTGG
ATCACACCCA AGCAGCGAAA ATCAGTGCCC TTAGTATTGA AACGCTCGAC CCATGCTCAG
GATTTACCGC AGCTCGAGGG TTTAAGTATT CAAAATGGTT TGTCGCACTG TGATCACAAC
GAATCACTCT ATAGCCATTT GTTGGGCTTA TTTATCAACA CCAGTAAGAC CTTATTGGGG
CAGCAGCAAC GTGCCTGGCA GGAGGAAAAC GCCGATGAGC TGCGCTTAAG CTTGCACACC
TTAAAGGGCG TTGCCGCCAA CGTCGGGGCG ATGGAGATCA GCCGCCTTGC CAGTGAACTC
GAGCTGCAAT GCCTGACTGC GAAGCGGAGT TTTACGGTCG AGCTGCATGA GCAGTTATTG
GCGTTACAAA CTGAGTTACA GTGTTTAGTC AGTGGCTTAG AGATCTGGTA TCAGCAGAAC
AATAGCATCA AGCCGGAAGC CTCGTTCAGC GATGAAGCGC TCGCGGCCAT GTGGCCGCAG
TTAGAGCAAA GCCTGCTGGA ATACAACACC AATGCCTTGG AGTGGGTGAA TAAGCTGACC
CATGCGCCGC AGTTACAGGG GGAGTCAGGC CTGCTCAAAC AGTTAAAAAT GGACGTTGAA
CTGTTTGATT TTGAACAGGC ATTAGTGCGA CTACTAACCC TTAAACAGGC GCAACAGGCG
AGGGCGACGA CATGCAGTTA A
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| Protein sequence | MAVFGILSGR LDKAIRHIFT TIGGQRQSVK PSVRVISSLG YFACLLSLSA SLLWLWPNTI
AANEMSLQEH RQALSQLTPA QKLAHSHRVS MILEADRPFW NQVAKFAKIA AMDLNIQLDI
VYGDGTPETL LALGHEAIDN AVAGIIFVPI LGMGQDLLVE AKRNNIPVVT INSEFAQSSL
ALRTQNPNWV GKVTMNSSNL GQNLLEKMFE EEASSEQMNL LLLAGSKDNL DVQKRTAELK
NAVSRQFANA KFKVVNTDWS ASAARAAYLK AIQQDPNINT VIAMNTTMAM AVTHEAEADT
SRPMPHIGSL SWNHQLAQGI QKGTVAAGVG GVEFQGAFGL VLLFDYLNGV DTRAKGFEFQ
VLPLIISPNN YNDYYELLDF DSLQPDFSRV SLALNTNLFL VDFRLGSLIP NMDVHRFMTQ
LSVEERAFIN NNPIVKVGID PHSAPIDFID ENGIHRGMMA DYLAEISRVV PLIFQTYNEG
SWQQAIDEFK RHDVDMLSLA SANAGREQWM LFTDAINQYP PVIVTHVDGE HPSSLEQLKG
KSVSVVSGDV TQTQLLEDYP EIVLIPFENL EQALMAVKQH QVDAAFVNFP STAYLLQSPQ
FNRLQIVSAS DYRFGISMGV RKDWPELQSI LNKALAQIPQ DKVREIQHRW VNVQYELGLK
KQQVFDWAVR IAVAVVLVLL MFSLRNRRLN KDIAQRIHTE EQLSLSMNKF QALFDSAVDA
CVITDRQGVI IECNSALLSL LKYQHKHQLI GRRTLVYYPP HLGETDSETL FEQRLQTVLE
QGQLRFEADF VTSMAEIVNV EVTLKRIELN GSLFVLGTYH DLSERKLMNA LLERERDLLK
HVLGRSPIGV WICIEGVCRY VNEQITEMTG LQVGQSVYPI FAQPDDYRCH ISELDLSQDS
TVFETQLFDC KGQRRDVLLT AYHTVQDGQN ANLCWALDIT DTKSIQDELA IAKDAAEAAN
RAKSDFLANM SHEIRTPMNA ILGMSYLVLQ TELSSKQRDY VGKVHQAAGS LLGILNDILD
FSKIEAEKMD IECAVFDLDD VLSNLANVVS YKVEEKNMAF IFDLPPELPR YYHGDGLRLG
QILINYCNNA VKFSHNDSNV VLSCESKVHG EQVELTFCVE DFGIGIPEQK QGVLFGSFEQ
VDASTSREYG GTGLGLAICK RLAHLMGGEV WCESELGVGS RFYVRLTLDC ADTYDPNALF
DPLAGETAKL IGLHPRLDKL LTIHGVSANM QVESADVGTV IAQLKQSSTR QLLICDYSAF
VPELLEALAV NQASRMLLIG QLSDQDSLRQ LIENNDRVIS QTKPLTPIAI GNALLSLLGH
QSEDGRQVQQ DHSLHALKTQ LAGAEVLLVE DNQLNQELAV ELLRQAGINV TVANHGLEAI
ERVEQQYFDC VLMDCQMPVL DGYEATRRIR ELPQFANLPI LAMTANAMSG DIEKALAVGM
NDQITKPVHV KDLYTVMARW ITPKQRKSVP LVLKRSTHAQ DLPQLEGLSI QNGLSHCDHN
ESLYSHLLGL FINTSKTLLG QQQRAWQEEN ADELRLSLHT LKGVAANVGA MEISRLASEL
ELQCLTAKRS FTVELHEQLL ALQTELQCLV SGLEIWYQQN NSIKPEASFS DEALAAMWPQ
LEQSLLEYNT NALEWVNKLT HAPQLQGESG LLKQLKMDVE LFDFEQALVR LLTLKQAQQA
RATTCS
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