| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0427 |
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| Symbol | |
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| ID | 4479334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 487935 |
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| End bp | 489941 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639724963 |
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| Product | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase |
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| Protein accession | YP_868076 |
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| Protein GI | 117918884 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG0511] Biotin carboxyl carrier protein |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00328554 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.268378 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAT TAAAAGAAGT TTTTGTTCCT GATATCGGCG GCGATGAAGT ACAGGTTATC
GAAATCTGTG CTTCTGTGGG CGATACCTTA GCAGCGGAAG AGTCGATTCT GACCGTTGAA
AGCGACAAGG CGACCATGGA CATTCCTGCG CCGTTCGCGG GTGTGTTAGC CGAATTGAAA
GTGGCCGTCG GTGACAAAGT CAGCGAAGGT ACCTTAATTG CGATGATGCA AGCAGCGGGC
ACGGCTAATG TTCAAGCTGC ACCGGTTGCT CAAGCTGCCG CTCCTGCGCC AGCACCAGCA
GCACCTGCTC CAGTACAAGC GGCTCCTGCC CCTGTGGCTG CCGCGCCAGC CACGGGTGCA
ACCCAAGTGG TTGAAGTCAC TGTGCCGGAT ATCGGTGGTG ACACAGATGT GTCTGTTATC
GAAGTCTTAG TTGCCGCTGG CGATAAGATT GAGGTGGACG CTGGCCTTAT CACGCTTGAA
ACCGACAAAG CGACCATGGA CGTACCATCG CCATTCGCGG GTGTGGTAAA AGAAGTGAAA
GTGGCTGTGG GTGACAAGGT TTCTCAAGGC TCCTTAGTGA TCATGCTCGA AGTGGGTGGC
GCAGCTCCTG CTGCCGCTGC TCCACAAGCA AGCGCGTCAG CTCCTGTCGC TCAAGCTGCA
CCTGCGGCGG CTGTTGCTCC AGTAGCTGCT GCACCAGTGG TTGCGGTTAA AGAAATCCAA
GTGCCAGATA TTGGTGATGC CAGCAATGTC GATGTGATCG AAGTGCTAGT GTCTGTGGGT
GATATGATCA CTGCTGACCA AGGTTTGATC ACGTTAGAAA CCGATAAAGC GACCATGGAA
GTGCCTGCGC CATTCGCCGG TAAACTGTTG TCGTTAACCG TTAAAGTCGG TGATAAGGTT
TCTCAAGGTA GCGTGATTGC GACGATTGAG ACTGTGACTG CTGGTGCAGC TCCTGCGCCT
CAAGCCGCAG CACCTGCACC TGTCGCCCAA GAAGCGGCAC CAGCACCTGT TGCAGCCGCG
CCGAGCCGTC CACCGGTTCC ACATCACCCA AGTGCGGGTG CGCCAGTGGC AACCGGTGTG
GTGCATGCGT CTCCTGCGGT TCGCCGTTTG GCCCGTGAGT TTGGTGTGGA TCTCACTCAA
GTGACGGGTT CTGGCCGTAA AGGTCGCATC ATGAAGGAAG ACGTACAGGC GTATGTGAAG
TACGAACTGT CTCGTCCTAA GGCGACAGCA GCAACTTCAG TTGCAGCGGG TAACGGTGGT
GGTCTGCAAG TGATTGCTGC ACCGAAAGTG GATTTCAGCA AGTTTGGTGA AGTGGAAGAA
ATTCCATTAA GCCGTATCCA GAAGATCTCT GGTCCAAACC TACACCGTAA CTGGGTAACT
ATTCCTCACG TGACTCAGTT CGATGAAGCT GATATCACCG AAATGGAAGA GTTCCGTAAG
CAGCAGAACG ACGCGGCGGC GAAGAAGAAA GCCGATTATA AGATCACTCC GCTGGTCTTT
ATGATGAAAG CTGTGGCGAA AACGCTGCAA CAATTCCCTG TGTTCAACTC AAGCTTAAGC
AGCGACGGTG AATCACTGAT CCAGAAGAAG TACTACCACA TCGGTGTGGC GGTGGATACG
CCAAACGGTC TAGTGGTTCC TGTGGTACGT GATGTGGATA AGAAAGGCAT TATCGAGTTA
TCTCGTGAGT TGGCCGATAT TTCTATCCGC GCCCGCGATG GTAAGCTGAA GTCTGCCGAT
ATGCAGGGTA GCTGCTTCAC TATTTCAAGC CTAGGTGGCA TTGGTGGTAC TGCATTTACC
CCAATCGTTA ACTACCCAGA CGTGGCGATT TTAGGTGTGT CTAAATCTGA AATTAAGCCT
AAGTGGAATG GTAAAGAATT CGAGCCTAAA TTGATGTTGC CACTGTCGCT ATCATACGAT
CACCGCGTGA TCGATGGTGC TATGGCTGCA CGCTTTAGCG TGACCCTGTC AGGAATTCTG
TCCGATATTC GTACTTTGAT TCTGTAA
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| Protein sequence | MAELKEVFVP DIGGDEVQVI EICASVGDTL AAEESILTVE SDKATMDIPA PFAGVLAELK
VAVGDKVSEG TLIAMMQAAG TANVQAAPVA QAAAPAPAPA APAPVQAAPA PVAAAPATGA
TQVVEVTVPD IGGDTDVSVI EVLVAAGDKI EVDAGLITLE TDKATMDVPS PFAGVVKEVK
VAVGDKVSQG SLVIMLEVGG AAPAAAAPQA SASAPVAQAA PAAAVAPVAA APVVAVKEIQ
VPDIGDASNV DVIEVLVSVG DMITADQGLI TLETDKATME VPAPFAGKLL SLTVKVGDKV
SQGSVIATIE TVTAGAAPAP QAAAPAPVAQ EAAPAPVAAA PSRPPVPHHP SAGAPVATGV
VHASPAVRRL AREFGVDLTQ VTGSGRKGRI MKEDVQAYVK YELSRPKATA ATSVAAGNGG
GLQVIAAPKV DFSKFGEVEE IPLSRIQKIS GPNLHRNWVT IPHVTQFDEA DITEMEEFRK
QQNDAAAKKK ADYKITPLVF MMKAVAKTLQ QFPVFNSSLS SDGESLIQKK YYHIGVAVDT
PNGLVVPVVR DVDKKGIIEL SRELADISIR ARDGKLKSAD MQGSCFTISS LGGIGGTAFT
PIVNYPDVAI LGVSKSEIKP KWNGKEFEPK LMLPLSLSYD HRVIDGAMAA RFSVTLSGIL
SDIRTLIL
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