Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0399 |
Symbol | |
ID | 4479306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 457826 |
End bp | 458794 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639724935 |
Product | nifR3 family TIM-barrel protein |
Protein accession | YP_868048 |
Protein GI | 117918856 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000108898 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.147817 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGATTG GACCCTATCA ACTGAAGAAT CAGCTGATCG TGGCACCAAT GGCAGGTGTC ACCGATCAAG CTTTCCGTAA TCTCTGTCTT CGTTATGGTG CAGCCTTAGC GGTGTCGGAG ATGCTTTCAT CGAATCCTGA AGTTTGGGAC ACAGATAAGA GCCGCCAGCG TATGACGCAT TCCGGCGAGG AAGGTATTCG CTCAGTGCAA ATTGCAGGTG CAGATCCAGA GTTAATGGCG CAGGCCGCCC AGTTCAACGT CGAACAAGGT GCCCACATCA TTGATATCAA CATGGGATGC CCGGCAAAAA AAGTGAATAA AAAGCTGGCA GGTTCTGCCC TAATGCAAAA TCCACCCTTA GTGAAAGAAA TTTTACAAGC CGTGGTCGCT GCAGTAGAGG TGCCTGTCAC GTTAAAGATT CGCACAGGTT GGGAGCCTGA ACACAGGAAC GGTGTTCAAA TCGCCCAGAT TGCTGAGGAT TGTGGTATCG CCTCGCTCGC CGTTCACGGC CGCACGAGAC AATGCATGTA CAGAGGCGAC GCCGAGTACG ACACCATCAA AGCAATTAAA CAGAATGTCT CGATTCCTGT TGTCGCGAAT GGGGATATCG ACAGTCCGGA GAAAGCCCGC TTCGTGCTGG ACTATACCGG TGTCGATGCT CTGATGATAG GACGGGGTGC TCAAGGACGG CCTTGGATTT TCAGAGAAAT CCAGCACTAC TTGGATACGG GTAATAAGCT AGCGCCCATT GAGGTGGCTG AACAGCGTCA AGTGATGCTG GAACACCTCA CCAAACTTTA TGATTTGTAT GGTGAATATA AGGGTATCCG CTTCGCCAGA AAGCATATTG GATGGTACCT AGACCAAGAG GATCAGCGCC AGTTCCGGGC TGACTTTAAT CAGCTGGAAA CCGCTGCAGA ACAGTATTCC CTGGTGGAAT ATTATTTTGA TGAATTAGTA CAGAATTAA
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Protein sequence | MQIGPYQLKN QLIVAPMAGV TDQAFRNLCL RYGAALAVSE MLSSNPEVWD TDKSRQRMTH SGEEGIRSVQ IAGADPELMA QAAQFNVEQG AHIIDINMGC PAKKVNKKLA GSALMQNPPL VKEILQAVVA AVEVPVTLKI RTGWEPEHRN GVQIAQIAED CGIASLAVHG RTRQCMYRGD AEYDTIKAIK QNVSIPVVAN GDIDSPEKAR FVLDYTGVDA LMIGRGAQGR PWIFREIQHY LDTGNKLAPI EVAEQRQVML EHLTKLYDLY GEYKGIRFAR KHIGWYLDQE DQRQFRADFN QLETAAEQYS LVEYYFDELV QN
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