Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0391 |
Symbol | dapF |
ID | 4478973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 452040 |
End bp | 452867 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639724927 |
Product | diaminopimelate epimerase |
Protein accession | YP_868040 |
Protein GI | 117918848 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.749695 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTG GGCAACGATT TTATGGTGGT CGATGGTGTC ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCCGACCG TAACTTTGGC ATAGGTTTCG ACCAACTTTT ACTGGTTGAG CCGCCCTATG ATCCCGATTT GGATTTTCAC TATCGTATCT TTAATGCCGA CGGTGGTGAG GTCGAAAACT GCGGCAATGG CGCCCGTTGT TTTGCGCGCT TTGTTCGTAA TAAAGGGCTG ACGAATAAGA ATAAAATTCG CGTGAGCACC TCTGCGGGTA AGATGACTCT TCGCCTCGAA CGTGACGGTA CTGTCACTGT GAACATGGGC GTGCCCGTGC TCGACCCAAG CCAAATTCCT TTCAAAGCCA AAAAGGCCGA AAAAACCTAT CTGTTGCAGA CGCCGCAACA AACCTTTTTA TGTGGCGCGG CCTCTATGGG CAATCCCCAT TGCGTGCTCG ATGTGGAAGA TGTTGCCAAC GCCAATGTCG CCGAAATTGG CGCGCTGCTC ACTAAGCATG AGCGCTTCCC GCGCGGAGTA AACGTCGGCT TTATGCAGGT AGTTAACTCG GGCCATATCA AGCTTAGAGT TTATGAACGT GGTGCGGCCG AGACCTTAGC CTGTGGTACT GGCGCTTGTG CCGCCGTGGT GGTAGGGCAG ATCCAAGGCA AACTTGACCA ACAGGTACGT GTCGACTTAC CGGGGGGCAC CTTAACCATC AATTGGGAAG GCGAAGGCAA ACCCCTGTGG ATGACGGGAC CTGCGCAGCA CGTTTACGAT GGACAAATTC AGTTATGA
|
Protein sequence | MIQFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG IGFDQLLLVE PPYDPDLDFH YRIFNADGGE VENCGNGARC FARFVRNKGL TNKNKIRVST SAGKMTLRLE RDGTVTVNMG VPVLDPSQIP FKAKKAEKTY LLQTPQQTFL CGAASMGNPH CVLDVEDVAN ANVAEIGALL TKHERFPRGV NVGFMQVVNS GHIKLRVYER GAAETLACGT GACAAVVVGQ IQGKLDQQVR VDLPGGTLTI NWEGEGKPLW MTGPAQHVYD GQIQL
|
| |