Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0386 |
Symbol | hemC |
ID | 4478968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 446502 |
End bp | 447434 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639724922 |
Product | porphobilinogen deaminase |
Protein accession | YP_868035 |
Protein GI | 117918843 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00551577 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGAAA ACCGCATACG TATCGCTACC CGCAAGAGTC CGCTGGCCAT GTGGCAAGCA GAATTTGTTA AAGCAGAATT AGAACGCGTT CACCCAGGTA TCGTGGTGGA GCTATTGCCA ATGAGCACTA AGGGCGATGT TATCTTAGAC ACCCCATTAG CTAAGGTTGG TGGTAAGGGC CTATTCGTAA AAGAACTCGA AGTCGCCATG CTGGAAGACC AAGCCGATAT CGCGGTGCAC TCGATGAAAG ACGTGCCAGT GGATTTCCCC GAAGGCTTAG GACTGGAAGT GATTTGTGAG CGCGAAGATC CGCGCGACGC CTTTGTGTCT AACCTTTATA AGTCAATCAG TGAGTTGCCA CTTGGCGCCA CAGTCGGCAC CTCAAGCCTA CGTCGTCAGT GCCAGCTGCG CGCCTCACGC CCAGACCTGA TTATCAAAGA TCTGCGTGGC AACGTCGGTA CTCGCCTCGC GAAACTCGAT AACGGCGAAT ACGATGCGAT TATCCTGGCT GCTGCAGGTT TAATCCGCCT GAAATTGTCT GAGCGTATCG CCAGCTTTAT CTCTGCGGAA GAATCCTTAC CCGCCAACGG ACAAGGCGCT GTCGGTATCG AGTGCCGCAC TAACGATGAA CGCGTAAAAG CACTCCTAGC ACCTTTAGAA CACTTAGAGA CTCGCTACCG CGTGATCGCC GAGCGCGCCA TGAATACTCG CCTCGAAGGC GGCTGCCAAG TACCTATTGG TGCCTTTGCC GAAATCCACG GTGATGAGAT GACACTGCGC GGCCTCGTAG GTAACCCAGA TGGTAGCGAA ATCATCGAAG GCGTGATTAC AGGTCCAAAG ACCGAAGCAA CGAAACTCGG TGTGGCCCTG GCTGAAGAAC TACTCAGCAA AGGCGCCAAA AGCATCCTCG ACGCTGTTTA CGCAAAAGCC TAA
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Protein sequence | MSENRIRIAT RKSPLAMWQA EFVKAELERV HPGIVVELLP MSTKGDVILD TPLAKVGGKG LFVKELEVAM LEDQADIAVH SMKDVPVDFP EGLGLEVICE REDPRDAFVS NLYKSISELP LGATVGTSSL RRQCQLRASR PDLIIKDLRG NVGTRLAKLD NGEYDAIILA AAGLIRLKLS ERIASFISAE ESLPANGQGA VGIECRTNDE RVKALLAPLE HLETRYRVIA ERAMNTRLEG GCQVPIGAFA EIHGDEMTLR GLVGNPDGSE IIEGVITGPK TEATKLGVAL AEELLSKGAK SILDAVYAKA
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