Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0233 |
Symbol | |
ID | 4476478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 261588 |
End bp | 262835 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 639724762 |
Product | TPR repeat-containing protein |
Protein accession | YP_867883 |
Protein GI | 117918691 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0207631 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000607109 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGACGACAT TTTGGATTTT TATTGCGCTT GTTGTGTTGG TCAGCTTAAC GCTGATCTGG ATCCCGCATT TCAGACAGCA AAAGTTGTTA CGCACTGAAG AAGCCGGCGT TCGCAGACAA ACTAACCTTG AATTGTTCAA TGAACGTCTT GCCACTCTTG AGAAAGAACT CAATGAAGAA CTGCTCGACC AAGCTGAATT TGATGCACTG AAGAAAGAGC TAGAAATCAG CCTGCTCCAA GACATCAAAC AAGCGAGCGA TGATTCACTC GTCAACCAGA TCAAACCTAA GAGCATTTTA TGGCCATCGG TCATGTCGGT CTGCTTGATT GCGATTTCAG GTTACCTCTA TCAGCACTTG GGTGCCTTTG AGAATATCGG CAACACCCAA CCTGCTAACC CACATGCGGG TATGGACGCG GCGCAAATCA TGGCACAACG CGTACAGATG ATGGAGGCAC AAGTACAAGC CGAGCCTGAA AACAGCCAAG CTTGGTTCAG CCTAGGTCAC GCTTATATCT CTGCTAACCA ATTCGATAAA GCCGTTGCAG CCTTCGATAA GGTGATGGAA TTAGTCGGTA AACACGCTGA ATTAATTGGT CCAAAAGCAA CAGCTATGTA CTATAAAGCG GGTCAGCAAA TGACTCCGCA AATTCAAGCT TTAATTGATG AATCTTTAGC GTTAGATCCA CAGGATCCAT CAACCTTACT GCTCGTCGGT ATGGATGCTT TCTTCACTGC TAACTATCAA AAAGCCATTG ATTCATGGCA AACCATTCTC AATAGCGACC GCACCGATGT AGACCGCGCC GCGCTGATGA ATGCCATTGA AACGGCAAAC CTGCGTATGC AAGGCGAAAC CGCGGGCATG CCTAACGATG ATGTCCACAA GCAGGCAAAA GTTGCGACTA AGTCTGTAAG TATTGCGATT TCAATTTCAC CCGAACTGGC CGCACAAGCA GGCCCTGATG ACACTATCTT CGTCTTCGCC CGTGCGACCG AAGGTCCTAA AGTGCCATTA GCGGCAACTA AGGTGAGCGC AAAAACTTTA CCGGTAACAG TAACGCTCGA TGACAGCACA GGTATGGGTG GCGATGTGAA ACTGAGCCAA ACTGCGAGTG TTGAAGTGAT CGCGGTGTTG TCTAAGCATG GCAATATCAA ACCTCAGGCA GGTGATATTC AAGGCAAAGT CAGCAAAGTA AATGTGGGTG ACACTGCAAG CTTAGTGTTA GATACCCAAG TGCAATAA
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Protein sequence | MTTFWIFIAL VVLVSLTLIW IPHFRQQKLL RTEEAGVRRQ TNLELFNERL ATLEKELNEE LLDQAEFDAL KKELEISLLQ DIKQASDDSL VNQIKPKSIL WPSVMSVCLI AISGYLYQHL GAFENIGNTQ PANPHAGMDA AQIMAQRVQM MEAQVQAEPE NSQAWFSLGH AYISANQFDK AVAAFDKVME LVGKHAELIG PKATAMYYKA GQQMTPQIQA LIDESLALDP QDPSTLLLVG MDAFFTANYQ KAIDSWQTIL NSDRTDVDRA ALMNAIETAN LRMQGETAGM PNDDVHKQAK VATKSVSIAI SISPELAAQA GPDDTIFVFA RATEGPKVPL AATKVSAKTL PVTVTLDDST GMGGDVKLSQ TASVEVIAVL SKHGNIKPQA GDIQGKVSKV NVGDTASLVL DTQVQ
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