Gene Shewana3_0159 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0159 
Symbol 
ID4478296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp183125 
End bp184312 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content51% 
IMG OID639724679 
Productgeneral secretion pathway protein L 
Protein accessionYP_867809 
Protein GI117918617 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3297] Type II secretory pathway, component PulL 
TIGRFAM ID[TIGR01709] general secretion pathway protein L 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTGAAC GGCTATTTAT TCGCTTAGGC AGAACCGCAG AGCAGGCATG CTCTTGGCTG 
GTTTGGTCCG AACAAGAACA AGAAATTATC GCCTCTGGTG AACTTGCCAA CGCCCAAGGT
TTATCAACCT TAACCGAGCG CGCGGGAAAT CGGCCTATCG ATGTATTGGT GCCAGCCTCC
GCTATGACGC TCACCAGCGT GAATCTGCCC GAAAAAGGCC AACGCCAAGC CTTAAAAGCC
CTGCCTTTTA TGTTGGAAGA AACTATTGCC GACGATGTGG ATGCGATGCA CTTTACCGTT
GGCCCGCGCA ATGGCGATGC CCTCAGTGTG GTGGCCGTTG CCCATGAGCA AATGCAAACT
TGGCTCAGCT GTTTGGCCGA AGCGGGTTTA AAAGTGAAGC GTATCGTGCC TGATTGCCTC
GCCTTGCCAT TGCAGGAATG CCAATGGGCG GCCATGCGTT TCGGTAACGA GTTATTACTG
CGTACAGGAT TAGGGACTGG CCACAGTCTG CCTTTACCTT GGCTGCCAGT CGCGATGAAG
CAACTGACGG CGCAGGCCGA CGAAGTGTCG GTCGCCAGTT ACACTGAGAT GGAGCTGGAC
GGCGTTGAAC TTAAGCCACA GCCGCTCGAT TTACCTATGT TGGTACTGGC GCGTGGCATT
TTACATGCGC CCATCAACTT ACTCACGGGT GTGTATACGC CGAAGCGCGA ATACAGTAAG
CATCTGTTGC AGTGGAAAAA TGCCGCAATC GTGTTAGGTG TTGCCATTGT CTTGTCCTTA
GTGAATAAGG GCTTAACCAT TCATCAGGTG AATGGTCAGA TTGCCGATTT GAAGGCGCAG
AGTGAGGCCA TTTATCAACA AGTGGTGCCG GGGAATTCAC GCATTGTGAA TTTACGTTCG
CAGATGGAAA GCCAATTACG AGCACTCCAA GGGCAAGGCA GTGGTGCTGA GTTTTTTGCG
ATGCTCGATG GTTTACAGGA CGCCTTTAAA CAAGTGCCCG AGCTGAAACC AAACACCCTA
AGATTTGAGA GCGCACGTAA TGAAATCCGT ATGCAAGTCA CGGCTAAGAA TTACGCGCAA
ATTGAGAAGT TTAAAGAAAT AGTCGGCCGT CGCTTCCAAA TGGACGGCGG TACGATGAAC
AGCGGTGAAG ATCAGGTCAC CAGCACCTTA ACCTTGAGGA GCAAATAA
 
Protein sequence
MSERLFIRLG RTAEQACSWL VWSEQEQEII ASGELANAQG LSTLTERAGN RPIDVLVPAS 
AMTLTSVNLP EKGQRQALKA LPFMLEETIA DDVDAMHFTV GPRNGDALSV VAVAHEQMQT
WLSCLAEAGL KVKRIVPDCL ALPLQECQWA AMRFGNELLL RTGLGTGHSL PLPWLPVAMK
QLTAQADEVS VASYTEMELD GVELKPQPLD LPMLVLARGI LHAPINLLTG VYTPKREYSK
HLLQWKNAAI VLGVAIVLSL VNKGLTIHQV NGQIADLKAQ SEAIYQQVVP GNSRIVNLRS
QMESQLRALQ GQGSGAEFFA MLDGLQDAFK QVPELKPNTL RFESARNEIR MQVTAKNYAQ
IEKFKEIVGR RFQMDGGTMN SGEDQVTSTL TLRSK