| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0151 |
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| Symbol | |
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| ID | 4477300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 175003 |
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| End bp | 177111 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639724671 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_867801 |
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| Protein GI | 117918609 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0216761 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAACA AACGGATTCG ACGCAAACTG ATTGCTGGAG TTGTGGCAGG CGCCACTATG
CTGACCTCGC AATTTGTTTG GTCTGAACAA TATGCGGCCA ACTTTAAAGG CACTGATATC
CAAGAATTTA TCAACATTGT TGGTAAAAAC CTGAATAAAA CCATCATTGT TGACCCGACC
ATTCGCGGCA AGATCAACGT GCGCAGTTAT GATCTGCTCA ACGATGAGCA GTATTACCAA
TTCTTCCTCA ACGTGTTGCA AGTCTACGGT TATGCCATCG TCGAGATGGA AAACAACGTC
ATCAAAGTCA TTAAAGACAA AGATGCGAAA ACCGCGGCGA TTCGTGTTGC TAACGACAAC
GACCCAGGTT TAGGTGATGA AATGGTCACC CGCATCGTGG CGCTGTATAA CACCGAAGCC
AAGCAGTTAG CGCCGTTGTT ACGTCAGTTA AACGATAACG CCGGTGGCGG TAACGTAGTG
AACTACGACC CATCGAACGT ACTGATGCTG TCAGGCCGCG CCGCTGTAGT TAACAAGTTA
GTCGAAATCG TTCGCCGTGT AGATAAACAG GGTGATACCT CGGTACAAGT AGTGCCGCTC
GAATACGCCT CAGCCGGTGA AATGGTGCGA ATTATCGATA CCCTTTACCG CGCGACAGCT
AACCAAGCGC AGCTCCCAGG ACAAGCGCCT AAGGTTGTTG CCGACGAGCG TATTAACGCC
GTCGTGGTCA GTGGTGATGA AAAGAGCCGC CAACGCGTGG TTGAGCTTAT CCATCGCCTC
GATGCCGAGC AGGCTAGCAC GGGTAACACT AAGGTACGTT ATTTACGTTA TGCCAAGGCT
GAAGACTTGG TTGAAGTGCT GACCGGATTT GCGCAAAAGC TTGAGGGTGA AAAAGATCCA
AGCGCCCAAG CTGGCGGTAA ACGTCGTAAT GAAATCAATA TTATGGCCCA CACTGATACC
AACGCCTTAG TGATCAGCGC CGAGCCAGAT CAAATGCGCA CAATCGAGAG CGTGATCAAC
CAACTCGATA TTCGCCGCGC TCAAGTATTA GTTGAAGCCA TTATCGTGGA AGTTGCCGAA
GGCGATAACG TCGGCTTTGG GGTGCAATGG GCCGCGAAAG CGGATGGTGG CACTCAGTTC
AATAACTTAG GCCCAACCAT TGGTGAAATT GGCGCTGGTA TTTGGCAGGC ACAAGATAAA
GAAGGGACTT ATATTACCAA CCCTAGTACG GGGGAAGTGA TCGGTAAAAA CCCTGATACT
AAAGGCGATG TTACTTTACT CGCCCAAGCC TTAGGTAAAG TGAATGGTAT GGCGTGGGGC
GTGGCCATGG GCGACTTTGG CGCCCTAGTT CAAGCTGTGT CGGCCGATAC CAACTCAAAC
GTTCTGGCAA CACCTTCGAT TACGACATTG GATAACCAAG AAGCCTCGTT TATCGTCGGT
GACGAAGTGC CGATTCTGAC GGGTTCTACC GCCAGCTCAA ACAACAGTAA CCCATTCCAA
ACCGTTGAAC GGAAAGAGGT TGGGGTGAAG TTAAAAGTGG TGCCTCAAAT CAACGAAGGC
AACGCGGTTA AGCTTGCGAT TGAGCAAGAA GTCTCGGGCG TAAACGGTAA CACGGGTGTA
GATATCTCCT TCGCGACTCG CCGTTTAACC ACCACTGTAA TGGCCGACTC AGGACAAATC
GTGGTGCTCG GTGGTTTGAT TAACGAAGAA GTCCAAGAAA GCGTGCAGAA AGTGCCATTC
CTCGGCGATA TTCCGGTGCT CGGACACTTA TTCAAGTCTT CTTCCAGTAA GAAGACCAAA
AAGAACCTGA TGATCTTTAT CAAGCCCACC ATTATCCGTG ATGGTGTGAC TATGGAAGGT
ATCGCAGGCC GTAAATACAA CTATTTCAGA GCATTACAAC TTGAGCAGCA AGAGCGCGGC
GTGAACCTGA TGCCAAATAC TCAAGTGCCA ATTCTGGAAG AATGGAATCA ATCTGAATAT
CTGCCGCCCG AAGTGAACGA CATTTTAGAT CGTTACAAAG AAGGTAAAGG GTTAGAAACT
CAGATGCGTA AAACGGACTC GACCCTCAAG TCGCTGGATG AAAACAAGAA CAAAGACAAA
ACACAATGA
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| Protein sequence | MNNKRIRRKL IAGVVAGATM LTSQFVWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT
IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENNV IKVIKDKDAK TAAIRVANDN
DPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML SGRAAVVNKL
VEIVRRVDKQ GDTSVQVVPL EYASAGEMVR IIDTLYRATA NQAQLPGQAP KVVADERINA
VVVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLEGEKDP
SAQAGGKRRN EINIMAHTDT NALVISAEPD QMRTIESVIN QLDIRRAQVL VEAIIVEVAE
GDNVGFGVQW AAKADGGTQF NNLGPTIGEI GAGIWQAQDK EGTYITNPST GEVIGKNPDT
KGDVTLLAQA LGKVNGMAWG VAMGDFGALV QAVSADTNSN VLATPSITTL DNQEASFIVG
DEVPILTGST ASSNNSNPFQ TVERKEVGVK LKVVPQINEG NAVKLAIEQE VSGVNGNTGV
DISFATRRLT TTVMADSGQI VVLGGLINEE VQESVQKVPF LGDIPVLGHL FKSSSSKKTK
KNLMIFIKPT IIRDGVTMEG IAGRKYNYFR ALQLEQQERG VNLMPNTQVP ILEEWNQSEY
LPPEVNDILD RYKEGKGLET QMRKTDSTLK SLDENKNKDK TQ
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