Gene Shewana3_0089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0089 
Symbol 
ID4478025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp100534 
End bp101214 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content48% 
IMG OID639724609 
Product2,3-diketo-5-methylthio-1-phosphopentane phosphatase 
Protein accessionYP_867740 
Protein GI117918548 
COG category[C] Energy production and conversion 
COG ID[COG4229] Predicted enolase-phosphatase 
TIGRFAM ID[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR01691] 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTATCA GAGCCATAGT CGTAGACACA GCAGGCACCA CGACAGACCT AACCTTTATC 
CAAGATGTGC TATTCCCCTA TTCTGTCAAA GCCTTACCAG ACTTTTTAGC GCAGAACCAA
CACAATGTCT TGGTGGAAAA CTGTATCTGC GACACCCGAG ATATCGCCCT CGAACCCGAT
GCCAATTTAG CCCGCGTGAC TGAAATTTTG CAGCAATGGG TACATGAAGA CCGCAAAGCG
ACCCCACTCA AGACCCTACA GGGTTTGATT TGGAAGCAAG GTTACGCCCA TGGCGAATTT
ACAGGCCATA TCTTCCCCGA CTTTATCGAA GCGGTTAACC GTTTTAGCGC GCAAAAACTG
CGTATTTACA GCTTCTCTTC GGGTTCAGTT GAAGCCCAAA AACTGCTGTT CAGCCACAGT
GATGGCGGCG ATTTAACCGA AATGTTTAGC GGCCATTTTG ATACCCGTAC CGGTAACAAA
TTAGATAAAC AAGCCTACGC TAACATACTC AACACCATCA GCTTAAGCCC TAAGCAAGTG
CTGTTTGTGT CCGACGTGGT TGAAGAGCTT AAAGCCGCCG AAGCCGCAGG CATGATGACC
TGCCAAATGG TGCGCGACAG CAAACAACGC ACCGGCGATT ATCGCACTAT TAACAGTTTC
GATGAGCTAG TGATCGACTA A
 
Protein sequence
MGIRAIVVDT AGTTTDLTFI QDVLFPYSVK ALPDFLAQNQ HNVLVENCIC DTRDIALEPD 
ANLARVTEIL QQWVHEDRKA TPLKTLQGLI WKQGYAHGEF TGHIFPDFIE AVNRFSAQKL
RIYSFSSGSV EAQKLLFSHS DGGDLTEMFS GHFDTRTGNK LDKQAYANIL NTISLSPKQV
LFVSDVVEEL KAAEAAGMMT CQMVRDSKQR TGDYRTINSF DELVID