| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0074 |
|---|
| Symbol | |
|---|
| ID | 4478010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 86091 |
|---|
| End bp | 87230 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639724594 |
|---|
| Product | transport protein, putative |
|---|
| Protein accession | YP_867725 |
|---|
| Protein GI | 117918533 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1668] ABC-type Na+ efflux pump, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000331098 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAA TCATCGCAAT GGTTCGCAAG GAACTGATAG ACGCCGCCCG CGATAAACGC
TCTGTGATGG CGGGACTCTA CTACGCCATA GGCACGCCGC TGATCATGTG TGGCCTATTT
ATGGTGCTTA TCGGCCAACT GACCAGCCCT GACGATCTGA AAATCAGCAT CACTAACCCC
GACAAGGCGC CGGACTTAGT GAGATTTTTA TCCAACAAAG GGATTACTCA GGGCGAAGCA
GGCGCTAAGG ATCTGAAAGC CATCGAGCTG ATTATCAGCC CCGACTATGC CAAGCAGATG
AACCAAGGCA AAGGCGCAGA GATAACTATC GTGGCCGATA ACTCAGAGGA AAAACTGCAA
AACTCGATTC GCCGCTTAGA GAAACAGTTG CAGGCCTATA GCGCCGAAAT GGGCAGCCTA
CGCTTAATCG CCCGTGGCAT CGACCCTCGA GTGGTGCAGC CACTGAAAGT GAATGTGCAT
GACCAAGCCA CGACCGACTC TAAGGGCGGG ATGATCTTAG GCATCGCCAT TTTCACTATG
ATTTACTCAG TGTTTATCTC GGGGATGAAT CTGGCTATCG ACACCAGCGC CGGTGAGCGT
GAGCGCAACT CCTTGGCATT GTTACTCAGC CATCCGCTGA CCACACGCCA GTTAGTGCTC
TCTAAAATCA TCGCCGTCGG CCTGTTTGCC CTGCTCGGCT TAGTGTTGAT TTTACTGGTG
TCTAAGGTCG CCTATACCTT CGTGCCTTGG CAGGAACTCG GCTTTAGCGT CAGCATCACC
AATGAGTTTA TGGCGCTAAT GTTGCTGGTC GGTATCCCCG TCGCGCTGAT GGCTGCCTGC
CTGCAATTGT TTGTGTCCTT TATGGCGAAA ACCTTTAAGG AAGCCCAGTC CTACCTGACC
ATGGTGTTGT TTGTGCCCTT GGCGCTATCG ATGGCGGCCA GCTACAACAT AGCGCCGGAC
ATACTGCAAT GGTTGCCAGT ATCCGGTCAG CAACAGGCGC TGATGGACTT TATCAAAGGT
AAGGACATGA GCATGCTGCA ACTGCTGGTA TCGACGCTCG GCACCTTAGC CATCGCCCTC
GTCTTGGCGC TTGGTATGGA AAAATCCTTA AAGAGTGAAA AAGTGGTCTT CGGCTTATAA
|
|---|
| Protein sequence | MNKIIAMVRK ELIDAARDKR SVMAGLYYAI GTPLIMCGLF MVLIGQLTSP DDLKISITNP
DKAPDLVRFL SNKGITQGEA GAKDLKAIEL IISPDYAKQM NQGKGAEITI VADNSEEKLQ
NSIRRLEKQL QAYSAEMGSL RLIARGIDPR VVQPLKVNVH DQATTDSKGG MILGIAIFTM
IYSVFISGMN LAIDTSAGER ERNSLALLLS HPLTTRQLVL SKIIAVGLFA LLGLVLILLV
SKVAYTFVPW QELGFSVSIT NEFMALMLLV GIPVALMAAC LQLFVSFMAK TFKEAQSYLT
MVLFVPLALS MAASYNIAPD ILQWLPVSGQ QQALMDFIKG KDMSMLQLLV STLGTLAIAL
VLALGMEKSL KSEKVVFGL
|
|---|
| |