Gene Shewana3_0065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0065 
Symbol 
ID4478001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp75834 
End bp76862 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content48% 
IMG OID639724585 
ProductLacI family transcription regulator 
Protein accessionYP_867716 
Protein GI117918524 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.94735e-09 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAACTA AAAACTGGAC TTTAAAGAGC ATAGCTAACG AGCTAGGTGT CTCTAACGCC 
ACTGTTTCTA ATGCTTTTAA TCGTCCCGAT CAGCTATCGG AAAAACGTCG CAACGAGATT
TTAGCCGCCT GCTCTAAACT GGGGTATTTT GGCCCAAACA AGGCGGCGCA GTCCCTACGT
AGGGGCAAAT TTGATACCGT CGCGCTGGTA CTGTCCGATA GTGTTGAATA TATGGTGTCC
GATCCTGTCG CCAGTAAGTT TATGAAGGGG GTGGCTTCGG TATTGGAGCG GGAAAAACTC
AACTTACTGC TATTTTCTGG CAGCTCCGAC AGTGTGAATG CGGTGGCCGA TTTTGTGGAT
GGGTTTATTT GTTATGGTCG CCCGCGCAAT GCCTTGCTCG CCGAGCAATT AAAACAGGTT
AAGAAGAAGG TGGTTACAGT GGACTTTGAT ATCCACCGCA ACGCTTCTGT CAGCATTGAC
AATAAGTTAG CCGCCTATGA GGTGGCAAAA TTGGCGTTAA AATCTCCCTC CGATCAAGTT
GCAATATTGG GATTGAGGCT ACTCGATACC CATTTAACTT GCCGAGTTTA CGATTTGAAT
TTGCTCGAAA TCGATATGTC GATTGCGCAC CAGAGGTTGC AGGGATATTT ACAGGCGATT
GAGGAAACGG GTGTCACCCT TGGTAATGAT CGGATTTGGA ATATTCCAGA AAGTAATGCG
GAGTATGCGC GGATTGCGGC CAAGGAGGCA TTAAACTCAA CCCCAAGACC CAATGTATTT
TTATGTATGA GCGACTTAAT TGCCCTCAGC GTGCTGGGTG AGGCGCAGGC CATGGGATTA
GCGATTCCGG AGGATATTCG TGTCGTGGGA TTTGATGGTA TTGATGAGGC GACTCGCTCA
ACTCCACCAC TGACCACGGT TTACCAATAC TCGGAACAAA AAGGCCAAAT GGCAGCGCAG
ATGTTTATCG ACGATGCCGT GCATGCTCAG GTATTAGGGT ATGAACTACG TTTAGGCAAA
AGCTGTTAA
 
Protein sequence
MTTKNWTLKS IANELGVSNA TVSNAFNRPD QLSEKRRNEI LAACSKLGYF GPNKAAQSLR 
RGKFDTVALV LSDSVEYMVS DPVASKFMKG VASVLEREKL NLLLFSGSSD SVNAVADFVD
GFICYGRPRN ALLAEQLKQV KKKVVTVDFD IHRNASVSID NKLAAYEVAK LALKSPSDQV
AILGLRLLDT HLTCRVYDLN LLEIDMSIAH QRLQGYLQAI EETGVTLGND RIWNIPESNA
EYARIAAKEA LNSTPRPNVF LCMSDLIALS VLGEAQAMGL AIPEDIRVVG FDGIDEATRS
TPPLTTVYQY SEQKGQMAAQ MFIDDAVHAQ VLGYELRLGK SC