Gene Shewana3_0049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0049 
Symbol 
ID4477985 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp57828 
End bp59033 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content49% 
IMG OID639724569 
ProductC-terminal processing peptidase-3 
Protein accessionYP_867700 
Protein GI117918508 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0793] Periplasmic protease 
TIGRFAM ID[TIGR00225] C-terminal peptidase (prc) 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.24234e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACAAC TAATCCGCAA TATCGTCTGC CTTGGGCTCG GCCTAAGCCT AGGTCTGTCC 
ATTAGCCTCT CCAGCCAAGA GAATGCCAAG TCATATCAAA GTGACTTCGA CTACCCGCTA
TTGCAGGATG TATTAGAAAC CGTCGAAACC TATTACGTTA AAACCGTTTC CAAAGATGAG
CTGGTGCAAG CCGCCATTAA AGGGATTTTT GAGCATTTAG ATCCCTATTC CAGCTTTTTA
AATCACCAAG AATTACTCGA CTTAAAAGAC TCAAATCGGG GCGAATACTT TGGCTTTGGC
TTTGAGGTCG CCAGCGATAA AGACCATATC AGCATTATCG CGCCCTTTGC CAATTCCCCC
GCCGAACAGG CCGGTATCCA AGCGGGCGAT ATCATTATCA AGCTGAATGA CACGCCAACC
ACCGAAACCA ACCTTGCGGA TATCCTCAAT CAAATCAAAC AACATAGCCT CAGCAATCAG
AGTATTCACC TCACACTGAA GCACCATAAT GATGACGCCC AGTTCGAGGT ATCACTCAAA
CCCAGTACCA TCACCATTCA ATCTGTCACC AGCAAATTAC TGGATGGTAA TATCGGCTAC
GTTAGGCTCA GTAGCTTTCA AGAGAACTCC ACCGAAGACA TGGTGCGCAG TTTAAGCCAG
TGGCAAAACG CGCATCTTAC GGGTTTGATA TTAGATTTAC GTAATAATCC CGGCGGCTTG
CTGGATCAGG CAATCAAAAT CGCTGACCTC TTTTTAGCGA AGGGCCGAAT CGTCTCAACC
TCTGGCCGCT TTTTCGATGC CAACTCCGAC TATTACGCCT CACCGCAAAC CATGCTGACC
AATGTGCCTA TGTTAGTGCT GATCAACAAA GGCTCGGCCT CCGCCTCCGA AGTCCTCGCT
GCCGCCCTGC AGGAAAATGG CCGCGCCAAA CTGCTTGGTG AAACTAGCTT TGGCAAAGGC
ACGGTGCAAA GCCTGATCCC CATACTGAAC GACGGCAATG CCATCAAGCT CACCATCGCC
CAGTACAACA CCCCCAGAGG GGAAAACATT CACGATATCG GCATAGTGCC CGACATTAAA
GTTGCAACCG AAACTGGCTC CAATCAAAAG AATATGGCTA TAATCGACGC CATCTCAGCA
CGAACCGATG TTAGCCAAGA CAGCCTAGTC ACCTCGGCAA TCGCTTGGAT GCAACATCAT
GACTAA
 
Protein sequence
MKQLIRNIVC LGLGLSLGLS ISLSSQENAK SYQSDFDYPL LQDVLETVET YYVKTVSKDE 
LVQAAIKGIF EHLDPYSSFL NHQELLDLKD SNRGEYFGFG FEVASDKDHI SIIAPFANSP
AEQAGIQAGD IIIKLNDTPT TETNLADILN QIKQHSLSNQ SIHLTLKHHN DDAQFEVSLK
PSTITIQSVT SKLLDGNIGY VRLSSFQENS TEDMVRSLSQ WQNAHLTGLI LDLRNNPGGL
LDQAIKIADL FLAKGRIVST SGRFFDANSD YYASPQTMLT NVPMLVLINK GSASASEVLA
AALQENGRAK LLGETSFGKG TVQSLIPILN DGNAIKLTIA QYNTPRGENI HDIGIVPDIK
VATETGSNQK NMAIIDAISA RTDVSQDSLV TSAIAWMQHH D