Gene Shewana3_0036 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0036 
Symbol 
ID4478908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp42976 
End bp44100 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content48% 
IMG OID639724552 
Productpeptidoglycan-binding LysM 
Protein accessionYP_867687 
Protein GI117918495 
COG category[S] Function unknown 
COG ID[COG1652] Uncharacterized protein containing LysM domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.43599e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACCGCA CCATGAAACG GCTAATTTTA CTTGCGTTAA TGACATTTAA TTGCACGTTG 
GTTTCCGCTG ATACTCTCAC GCTGAAAGCA GGGCATCCTG AGTCATATGT GGTAAAAAAG
GGCGATACCC TGTGGGATAT CTCGGCAACC TTTTTAAATG ACCCTTGGAA GTGGCCACGT
TTATGGGATG TTAACCCCCA AATTGCTAAC CCTCATTTAA TTTACCCCGG CGATCAGCTC
ACTTTAGTCT TTATCGATGG CCAACCCAGA TTAGTGCGCA ATGGCGCTAA CGAGGGAAAA
CCCCATATTC GCAAAACCCC TGAGGGGCGC GTGATTGCTA AGAGCAATGC GGTTCCTGCG
GTTGACTTAG CGTTAATCCA AAACTATCTG GTGCAAAACC GTGTGGTGGA TGCCGACTGG
TTTGCACAGC AACCTATGGT GCTCGCGGGT GAGAGCCCTT CACGTCACCA TGTGGTTGGC
GATGTGATTT ATATCGACAG CGAACTGCCC TTAAACCAAA AGCTGGGCAT GTATGAACGC
GGTCGTGACT TCTTCAATAA ACAAACGGGT GAAGCCTTAG GACAAGAAGC GATTCTGGCA
TCGACTGGCC AGGTTATCGA ATCTGGCAAA GTGTCTAAGG TAAAAATCCT CAGCAACTAC
CGTGAAACCA AGGCGGGTTT TAGGGCGTTG CCGATGGAAG ATGAAGCCTT AATGTCTGCC
TATTTTACGC CAAAACCTGC AGAGCTTAAG ACACCTGCGA CCGTACTGGC GATTGAATCG
AAAATGCGTG AGGCGGGTAA GCTAAATGTG GTGTACTTAG ATAAAGGCAC GCAGGATGGT
GTTGAGCCAG GTGAAGTGTT CTCCATTTAC CGCGATGGCG AAGAAATTGT GATCAATAAC
GATGGTCAAC CCGTACCTGC GGCCGAGCGC ACCGCCTATG ACAATGTGGT GGCATCACTG
TCGTCAGATC GCGCCATTAA GATGCCTGAT ATTTACCATG GAAAACTCTT AGTCTTTAAG
GTATTTGATA AAGCGAGCTT AGGTTTAGTT GTCTCGACGG AACGTTCTGT TCGGGTCGAC
GATAAATTAA TCGCGCCGGA CTCCTTAGCC TTTAGAGGTG AATAA
 
Protein sequence
MDRTMKRLIL LALMTFNCTL VSADTLTLKA GHPESYVVKK GDTLWDISAT FLNDPWKWPR 
LWDVNPQIAN PHLIYPGDQL TLVFIDGQPR LVRNGANEGK PHIRKTPEGR VIAKSNAVPA
VDLALIQNYL VQNRVVDADW FAQQPMVLAG ESPSRHHVVG DVIYIDSELP LNQKLGMYER
GRDFFNKQTG EALGQEAILA STGQVIESGK VSKVKILSNY RETKAGFRAL PMEDEALMSA
YFTPKPAELK TPATVLAIES KMREAGKLNV VYLDKGTQDG VEPGEVFSIY RDGEEIVINN
DGQPVPAAER TAYDNVVASL SSDRAIKMPD IYHGKLLVFK VFDKASLGLV VSTERSVRVD
DKLIAPDSLA FRGE