Gene Shewana3_0022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0022 
Symbol 
ID4479440 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp26815 
End bp28026 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content45% 
IMG OID639724538 
Productdiguanylate cyclase 
Protein accessionYP_867673 
Protein GI117918481 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.585928 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.15771e-08 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTGCAAA CGGAACAAAC GCTTTTCGAA CAAATGCGGA TCACTGAGCT TGAGATTGAT 
TTTCGCAAGT CCTTGTTCTC TTTTACCTTA GCCGATGTCA GAGCACTGCA ATCCTTCAAA
CCTGTGATTG AAGAGAACAT AGATAAAATC GTTGATGACT TTTACGGTCT ACAAACCAGT
GTGTCCGAGA TTGCTCTGCT GATCGGAGAC TCCGATACCC TAGCTCGTTT ACGTACCGCA
CAGAGACGTT ATGTGCTCGA CCTGTTTAAT GGTGTGTACG ATTTAGAATA TGTAAACAAC
CGCCTGCGGA TTGGATTGGT ACATAAGCGT ATCGGCGTTG AACCTAAACT CTACCTTTCT
GCCGTTCATA CTCTAAAAGA GTTGATTTAT GCCGAGATAA ATAACTCGGT TGCTGATGAC
TTGCAAAATG AACGCATTCG AGTCGCCATA GATAAACTTG TTCTCTTCGA CGTCACCCTC
GTCTTCGATA CCTATATTCG AAGCCTAGTA TCCGAAATTG AGAACGCCAA AGACAAGGCT
GAACGTTACG CACAGAGCAT GGAGAGCAAA GTCAAAGAAC GTACACAACA GCTCGAAGAA
TTATCTCAAA CCGACCCGTT AACGGGGCTA TTAAATGTGC GACACCTGCA AGAAATTGGC
ACTCGCATTT TAAGAGCAGC TCAGAGACGA GCCGAACCAG TTAGCGTAAT CTACTTAGAT
GTTGATGATT TCAAATCCTT TAATGATACC CAAGGCCATC GCTCTGGAGA CGAAGTGCTT
TGCGCCGTCG CGCAGGCCAT CAAAGAAAGC ACCCGCGTAG AAGATCATAG TTTTCGCTAC
GGTGGCGATG AGTTCTGCAT CATCATGCCC AATTGTCGAG AAGACCAAGC CAGAGACAAC
TTTATCGAGC GCTTTAATCA GAATATTAAA CTGCACCTAA ACAACATCTC CCTCAGTTAC
GGTATTGTTG ATACAGGCCC CTATGATTAC GATGATGCCA ATACCTTGAT CCATAAAGCG
GATCAAAAAA TGTATAGCTA TAAACGTGCT GCCAAGTTGC AGCAGCAAGG CTCAGTGTCG
ATTGCGGCAA ATGATATAAA ATCCGATATG CCTCAGTCCG CTTCTCAAGT AGGAACACCC
CAAGCAGCAA TTACGCCAAC CATAGTGCAT AGCATTCAAC AACCTCAGGG AATAAACAAA
GTTGCCGAGT AA
 
Protein sequence
MLQTEQTLFE QMRITELEID FRKSLFSFTL ADVRALQSFK PVIEENIDKI VDDFYGLQTS 
VSEIALLIGD SDTLARLRTA QRRYVLDLFN GVYDLEYVNN RLRIGLVHKR IGVEPKLYLS
AVHTLKELIY AEINNSVADD LQNERIRVAI DKLVLFDVTL VFDTYIRSLV SEIENAKDKA
ERYAQSMESK VKERTQQLEE LSQTDPLTGL LNVRHLQEIG TRILRAAQRR AEPVSVIYLD
VDDFKSFNDT QGHRSGDEVL CAVAQAIKES TRVEDHSFRY GGDEFCIIMP NCREDQARDN
FIERFNQNIK LHLNNISLSY GIVDTGPYDY DDANTLIHKA DQKMYSYKRA AKLQQQGSVS
IAANDIKSDM PQSASQVGTP QAAITPTIVH SIQQPQGINK VAE